| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Afer_1087 |
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| Symbol | |
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| ID | 8323157 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidimicrobium ferrooxidans DSM 10331 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013124 |
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| Strand | + |
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| Start bp | 1132941 |
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| End bp | 1133660 |
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| Gene Length | 720 bp |
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| Protein Length | 239 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644952215 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_003109693 |
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| Protein GI | 256371869 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.842348 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCCACG TCCTCGTCAC CGGCGCCGCA AGCGGCATCG GCCTCGCGAC CGTACGCACC
CTCCAAGCGA GTGGGTTTAC CATCTCGGCC GGCGTCCACC ACCGCCCCAT GCCCGACGAC
GTGCTCGCAG CGGGCAACGT GACCCCCGTC GAGCTCGACG TCACGAACTC CGAGAGCGTC
CTCAAGGCGG TGGCAGCGGC CGAGGCGGCC AACGGGACCA TCGAGGCACT CATCGCCAAC
GCCGGCCTCA CCGACGATCA GCTCCTGCTT CGCATGGATG AGGCGTCGTG GGCCGCGACG
ATCGACCTCA ACCTCACGTC CGCATTCCGA CTCGCCAAGG CCGTCGTCCC GCGCATGCTC
AAAGCCCGTC GCGGACGCAT CGTCTTCGTC TCGTCCGTTG TTGCCCTGCT CGGTTCGCCA
GGCCAGACGA GCTACGCAGC AGCGAAGGCC GGGCTCGTCG GCTTCGCGCG TTCACTCGCG
CGCGAAGTCG GATCTCGCGG CATCACCGTC AACGTGGTGA TGCCGGGCAT GATCGACACC
GATCTGCTGC GCGCGACCGG AGAGCAACGA CTCGCGTCCA TCCTCTCCCA GGTGCCGCTC
GGTCGCACCG GTCGGCCGGA GGAAGCGGCG TCGGTTCTCG CCTTTTTGGT CTCGGACGCC
GCGAGCTACG TGACCGGATC CGTCATCCCC GTCGACGGGG GTCTCGGAAT GGGCATCTAG
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| Protein sequence | MTHVLVTGAA SGIGLATVRT LQASGFTISA GVHHRPMPDD VLAAGNVTPV ELDVTNSESV
LKAVAAAEAA NGTIEALIAN AGLTDDQLLL RMDEASWAAT IDLNLTSAFR LAKAVVPRML
KARRGRIVFV SSVVALLGSP GQTSYAAAKA GLVGFARSLA REVGSRGITV NVVMPGMIDT
DLLRATGEQR LASILSQVPL GRTGRPEEAA SVLAFLVSDA ASYVTGSVIP VDGGLGMGI
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