Gene Afer_1060 details

Gene Information

• Locus tag: Afer_1060
• ID: 8323124
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Acidimicrobium ferrooxidans DSM 10331
• Kingdom: Bacteria
• Replicon accession: NC_013124
• Strand: +
• Start bp: 1098295
• End bp: 1098987
• Gene Length: 693 bp
• Protein Length: 230 aa
• Translation table: 11
• GC content: 68%
• IMG OID: 644952184
• Product: ABC transporter related
• Protein accession: YP_003109668
• Protein GI: 256371844
• COG category: [V] Defense mechanisms
• COG ID: [COG1136] ABC-type antimicrobial peptide transport system, ATPase component

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 0.724138
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGAGCGAGC CCTTCGAGCT CGTCCTCGAG CCGATCGTGG TGCGACGGGG GCGAGGATCC 
ATCCTCGAGC TTCCCGAACT TGCGCTCGCA TCCGGTGAGC TCACGGCGAT CATCGGACCG 
TCGGGGTCTG GGAAGACCAC GCTCCTCCAC GTCCTCGCAC GCATTCTCGA ACCCGACGAG 
GGGCGCGTCC TCTGGCGCGA TGCACACGGC GATCACCGAC TGCGCCGCCG CCAGAGCGTC 
CTCGTACCGC AAGCATTCGG ACTGGTTGCT GCGCTCACCG TCGCAGAGAA CATCGCGCTG 
GCGCTCAAGC TCCGCGGTGA ACGCGCCTCG GATCGTTCCC CGCTGGTACG AGACGCGCTC 
GCCTCGGTCG GGCTCGACGG GCTGGCGAAC CGACTGGTCG GTGAGTTGTC GGGCGGCCAG 
CAGCAGCGTG TTGCGGTCGC CCGAGCATTG GCCGTCGACA GCCCTATCCT GATCGCCGAC 
GAGCCGACCA GCGAGCTCGA CCCCGACAAC CGTGCGCTCG TGCTCGATCT CCTTCTCGAG 
CGAGCGCGCA GCGGTCCACT CGTCGTCCTG GCTTCCCATG ATCCGCTCGT CGCCGAGCGT 
GCCCACCGAA CACTGGAACT CGCCGAGGGT CGACTCGTCG ACGATCGCTG GACCCCCGAG 
AGCCAACGCA ACGGAAGCCC TGAGCAGCCG TGA 

 

Protein sequence

MSEPFELVLE PIVVRRGRGS ILELPELALA SGELTAIIGP SGSGKTTLLH VLARILEPDE 
GRVLWRDAHG DHRLRRRQSV LVPQAFGLVA ALTVAENIAL ALKLRGERAS DRSPLVRDAL 
ASVGLDGLAN RLVGELSGGQ QQRVAVARAL AVDSPILIAD EPTSELDPDN RALVLDLLLE 
RARSGPLVVL ASHDPLVAER AHRTLELAEG RLVDDRWTPE SQRNGSPEQP