Gene Afer_0983 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAfer_0983 
Symbol 
ID8323047 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidimicrobium ferrooxidans DSM 10331 
KingdomBacteria 
Replicon accessionNC_013124 
Strand- 
Start bp1003642 
End bp1004586 
Gene Length945 bp 
Protein Length314 aa 
Translation table11 
GC content63% 
IMG OID644952111 
ProductCRISPR-associated protein Cas1 
Protein accessionYP_003109595 
Protein GI256371771 
COG category[L] Replication, recombination and repair 
COG ID[COG1518] Uncharacterized protein predicted to be involved in DNA repair 
TIGRFAM ID[TIGR00287] CRISPR-associated endonuclease Cas1
[TIGR03638] CRISPR-associated endonuclease Cas1, ECOLI subtype 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACTGAAG GCCGTGTCCC ACTCAGTGGA GAGCGCGTCG GGATAGGCGA ACTCCAGCCG 
GTCTCACGAC GATCCTCGTT CGTCTACCTC GAGCACTGCG TCGTCCATCG GGATGCGAAT 
GCAGTCGTGT CGGTAACAGA GTCCGGCACG ACCTACCTGC CTGCAGCAGC GGTCGGCACG 
CTCCTCCTCG GTCCCGGAAC GCGCATCACC CATCAAGCCA TGCTGCTCCT GGGAGAATCC 
GGGGTCGTGG TGTGCTGGGT GGGCGAAGGT GATACTCGTC TGTACGCCTG GGCACCGTCG 
CTGTTCCAGT CTACGCGCTT CCTCGAGGCG CAAGCTCGTC TCGTCTCGAA TCGGCAAGAT 
CGACTCCGGG TCGCGCGCCA GATGTATCAG ATGCGCTTTC CCGGCGAGGA CGTGAGCAAG 
GCCACTATGC AGCGGCTCCG AGGCATGGAG GGCGCGCGCA TCCGTCGCAC GTATCGTCAC 
CTTGCCAGCG CCTTTGGGAT CGACTGGCAT GGTCGGCACT ACGACCCCAA CAACTCGTCC 
GCGGGCGATG ATGTCAATCG CGCGCTCTCC ATCGCGAACA GCGTGCTCTA CGGCGTGGTC 
CATACGGCGA TCGTTGCACT CGGCTGTAGT CCCGGCCTGG GCTTCGTCCA CACTGGCCAC 
TCGCTGTCGT TCGTCTACGA CGTCGCCGAC CTCTACAAGG TAGAACTGGC GATACCGGTG 
GCCTTCGAGG CAGCCGCCCA GCGAACGGGA AGTCTGTCGA GTCAGGTCCG ACGAACGATG 
CGGGAACGGA TTCACGAGGC ACATCTCCTC GAACGAGCCG TCGACGACAT TCGTCTCTTG 
CTTGGTACGC CAGATGCCGA CCTTGGGGGC GAACCCGGTC TCGTTCTCTT CGACGATCGC 
ATCGGCGAGG TCCCAGCGGG CACCGACTAC AGCTCCGACG TATGA
 
Protein sequence
MTEGRVPLSG ERVGIGELQP VSRRSSFVYL EHCVVHRDAN AVVSVTESGT TYLPAAAVGT 
LLLGPGTRIT HQAMLLLGES GVVVCWVGEG DTRLYAWAPS LFQSTRFLEA QARLVSNRQD 
RLRVARQMYQ MRFPGEDVSK ATMQRLRGME GARIRRTYRH LASAFGIDWH GRHYDPNNSS 
AGDDVNRALS IANSVLYGVV HTAIVALGCS PGLGFVHTGH SLSFVYDVAD LYKVELAIPV 
AFEAAAQRTG SLSSQVRRTM RERIHEAHLL ERAVDDIRLL LGTPDADLGG EPGLVLFDDR 
IGEVPAGTDY SSDV