Gene Afer_0947 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAfer_0947 
Symbol 
ID8323011 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidimicrobium ferrooxidans DSM 10331 
KingdomBacteria 
Replicon accessionNC_013124 
Strand
Start bp966917 
End bp969082 
Gene Length2166 bp 
Protein Length721 aa 
Translation table11 
GC content68% 
IMG OID644952075 
Product(p)ppGpp synthetase I, SpoT/RelA 
Protein accessionYP_003109559 
Protein GI256371735 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG0317] Guanosine polyphosphate pyrophosphohydrolases/synthetases 
TIGRFAM ID[TIGR00691] (p)ppGpp synthetase, RelA/SpoT family 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.452547 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCTCGACG AGCGGTGGTT AGCGGAGCGC TACGCCGACA ACCCGCTCGT GCTCGACGCC 
CTCGCGCTCG CGACGAAGGC GCACCACGGC CAGCTGCGCC GGTCTGGGGA GCCCTACATC
GTGCATCCCC TCGCGGTGGC CCGTCGCGTC GCCGAACTGC GCGCCGACCC GATCACCGTC
GCCGCGGCCT TGCTCCACGA CACGGTGGAG GATACCTCGA TCTCCCTGGA GGAACTCGAG
CAGCGTTTCG GCGCGGAGGT TGCCGCACTC GTAGACGGAG CGACGAAGCT CGACCGGCTC
TCGTTCGACT CCAAGGAGGT CGCGCAAGCC GCCACGATGC GCAAGATGCT CATCGCGATG
GCGCGTGACG TGCGCGTGTT GGTGATCAAG CTCGCCGATC GCCTGCACAA CATGCAGACG
ATCGGCGCTC TCGGGCGCGA GAAGCAGCGC CGGATCGCGC ACGAGACCAT GGACATCTAT
GCGCCACTCG CCCATCGCCT CGGCATCGAG GAGGTGAAGT GGCAGCTCGA GGATCATGCG
TTCGCGGTCC TGCATCCTCG GCGCTACGCC GAGATGGAGC ACCTCGTCAG TCAGCGGGCT
CCGGAGCGCG AGGCGCGGCT CCAGGCGGTC AGCGAACAGC TCGCTGCCAA GCTCGCCCAA
GTCGGGATCG TCGCCGAGGT CACGGCGCGC CCCAAGCACG TCTGGAGCAT CTACGAGAAG
ATGGTGCTGC GGGGCAAGGA GTTCGACGCG ATCTACGACA TCCTCGGGGT CCGCATCATC
ACACACGAGG AGCGTGACTG CTGGGCAGCG CTTGGCGTCA TCCACTCGCT GTGGGCGCCG
ATCCCCGGGC GGTTCAAGGA CTACATCAAC GCTCCGAAGT TCAACCTCTA CCAGTCGCTC
CACACCACCG TCGTCCTCGA GGGCGGGAGC CCGCTCGAGG TCCAGGTGCG CACCCGTGAG
ATGCATCTGC GCGCCGAGTA TGGCGTCGCC GCTCACTGGG GCTACAAGGA GGGTTCTGAT
GCGGCCGAGC TCGCCTGGCT CGGTCGGCTC ATCGACCTCG ACGAAGAGAC GCACGATCCG
GTCGAGTTCC TCGAGCACCT CAAGCTCGAT CTCGGGACCG ACGAGATCTA CGTGTTCACG
CCCAAGGGCA AGGTCATCAC CCTCCCGACG GGCGCGACGC CGCTCGACTT CGCCTATGCC
ATCCATACCG AGGTGGGGCA CCGGTGCGTC GGTGCCAAGG TGAACGGTCG GCTGGTCGCG
CTCGAGACGG AGCTGCGCTC GGGCGACACC GTCGAGGTGG TGACGAGTCG CTCCGCCACG
GCGGGTCCGT CGCGTGACTG GCTCGCGATC GTGCGCACCC CGAGGGCGCG CTCGAAGATC
CGCCAGTGGT TCTCGCGAGA GCGTCGGGAG GAGTCGATCG ACGCAGGTCG CGAGGAGCTC
GCTCGTGAGC TGCGTCGCGA GGGGTTGTCG GTGACCAAGC ACCTCTCGGG ACCGGGTCTT
GCGCGCCTGG CCGAGCAGGC CGGCTATCGA GAGGCCGAGA CCCTGCTCGC GGCCATCGGT
GAGGGCCACG TCTCGGCCCG GAGCGTGCTC GCCAAGGTGC AGCGAGCCGA GCTCGAGCAC
GACGGGTTCG AGCCGGCGGT CGCGACGCCG CAGCGGCGGC GCCGTGGAGG CGGGGGACCG
TCGATCTGGG TCGAGGGTCT CGACGACGTG CTCGTGCGGC TCGCACGCTG CTGCAACCCG
CTGCCGGGCG ATGCGATCGT CGGCTTCATC ACCCAGGGCC GTGGGGTCGC CATCCACCGA
GAGGACTGCC CGAACGTCGA GGCGTTGCTC GCCCAAGGGC CCGAGCGCAT GGTCGAGGTC
GACTGGGCGG GTGAGCACGG CTCCGGCTTC CAGATGGCGA TCGAGATCGA AGCCCTCGAC
CGGCCGCGTC TGCTCGCCGA CGTGTCCCGT GTGCTCGCCG AGCACCACGT GAACATTCTC
GCCTCCTCGT CGGGGCGCGG GAGTGATCTT GTCGCGGCGA TGCGTTTCGA GTTCGAGCTC
GCCGATCCGA GCCACCTGTC GTCGATCCTG GCGGGCATTC GCCAGCTCGA CGGTGTCTTC
AACGCTGCCC GAGTCGTTCC CGGGCGACGT CGCCCACGGA CCGCGACCCA GCACGACGGC
CGCTGA
 
Protein sequence
MLDERWLAER YADNPLVLDA LALATKAHHG QLRRSGEPYI VHPLAVARRV AELRADPITV 
AAALLHDTVE DTSISLEELE QRFGAEVAAL VDGATKLDRL SFDSKEVAQA ATMRKMLIAM
ARDVRVLVIK LADRLHNMQT IGALGREKQR RIAHETMDIY APLAHRLGIE EVKWQLEDHA
FAVLHPRRYA EMEHLVSQRA PEREARLQAV SEQLAAKLAQ VGIVAEVTAR PKHVWSIYEK
MVLRGKEFDA IYDILGVRII THEERDCWAA LGVIHSLWAP IPGRFKDYIN APKFNLYQSL
HTTVVLEGGS PLEVQVRTRE MHLRAEYGVA AHWGYKEGSD AAELAWLGRL IDLDEETHDP
VEFLEHLKLD LGTDEIYVFT PKGKVITLPT GATPLDFAYA IHTEVGHRCV GAKVNGRLVA
LETELRSGDT VEVVTSRSAT AGPSRDWLAI VRTPRARSKI RQWFSRERRE ESIDAGREEL
ARELRREGLS VTKHLSGPGL ARLAEQAGYR EAETLLAAIG EGHVSARSVL AKVQRAELEH
DGFEPAVATP QRRRRGGGGP SIWVEGLDDV LVRLARCCNP LPGDAIVGFI TQGRGVAIHR
EDCPNVEALL AQGPERMVEV DWAGEHGSGF QMAIEIEALD RPRLLADVSR VLAEHHVNIL
ASSSGRGSDL VAAMRFEFEL ADPSHLSSIL AGIRQLDGVF NAARVVPGRR RPRTATQHDG
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