| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Afer_0917 |
|---|
| Symbol | |
|---|
| ID | 8322981 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidimicrobium ferrooxidans DSM 10331 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013124 |
|---|
| Strand | + |
|---|
| Start bp | 936001 |
|---|
| End bp | 936777 |
|---|
| Gene Length | 777 bp |
|---|
| Protein Length | 258 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 644952051 |
|---|
| Product | Sec-independent protein translocase, TatC subunit |
|---|
| Protein accession | YP_003109535 |
|---|
| Protein GI | 256371711 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0805] Sec-independent protein secretion pathway component TatC |
|---|
| TIGRFAM ID | [TIGR00945] Twin arginine targeting (Tat) protein translocase TatC |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.23831 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGCGCTGC GGCGGCCACG ACGGCGCCGT CTCGACCCCA ACGCGATGAC CACCGTGGAG
CACCTGCGGG AGCTGCGACG TCGCCTGATT CGCGCCATCG TCGCGGTCAC CATCGGCGCC
ATCGCGGCCT ATGCGGTCTA CCCGCACCTG TTGTCGGTCC TGACCGAACC GTTGTGTACG
GTCGAGCACG AACCGCACTG CGTGCTGTAC GTGACCGGAC CGATCGATGG GTTCGCGATC
CGTCTCAAGG TGGCCGCGGT GGCGGGGCTG TTCCTCGCCT CCCCGATCGT GCTCTGGGAG
CTGTGGCGCT TCGTCGCTCC CGGCCTCAAG CGGGGCGAGC GACGCCTGAC GCTGGGGTTT
CTCGTGTCGT CGGTCGCGCT GTTCGTGGCG GGCGGCGTGG TGGCGTGGTT GGTCTATCCA
CGCGCCCTCG GGTTCTTCCA GTCGGCCGCG GGCGCCCAGG TGCACGCGAT CTACACGCCG
CAGAGCTACC TGTCGCTGTT GCTGATCCTC ATGATCGCCT TCGGCGTCGC CTTCTTGTTC
CCGGTCGTGC TGGTCGGCCT CGAACTCGCT GGCGTGGTGA GTCCGGCCGC GTTGCGGCGG
CACCGGCGTC CCGCGTGGCT CGGGATCATC GTGGTGGTGG CGATCCTCAT CCCCAGTAAC
GATCCCTACT CCTTGACCGC GATGACGGTG CCGCTCCTCG TGTTCTACGA GCTGTCGATC
GTGGTCGGTT CGGCGCTCAC CAAGCGGCGG GCACGCGTCG CCGACGCCGG AGGCTAA
|
|---|
| Protein sequence | MALRRPRRRR LDPNAMTTVE HLRELRRRLI RAIVAVTIGA IAAYAVYPHL LSVLTEPLCT
VEHEPHCVLY VTGPIDGFAI RLKVAAVAGL FLASPIVLWE LWRFVAPGLK RGERRLTLGF
LVSSVALFVA GGVVAWLVYP RALGFFQSAA GAQVHAIYTP QSYLSLLLIL MIAFGVAFLF
PVVLVGLELA GVVSPAALRR HRRPAWLGII VVVAILIPSN DPYSLTAMTV PLLVFYELSI
VVGSALTKRR ARVADAGG
|
|---|
| |