Gene Afer_0845 details

Gene Information

• Locus tag: Afer_0845
• ID: 8322908
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Acidimicrobium ferrooxidans DSM 10331
• Kingdom: Bacteria
• Replicon accession: NC_013124
• Strand: +
• Start bp: 866725
• End bp: 868587
• Gene Length: 1863 bp
• Protein Length: 620 aa
• Translation table: 11
• GC content: 70%
• IMG OID: 644951979
• Product: excinuclease ABC, C subunit
• Protein accession: YP_003109464
• Protein GI: 256371640
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0322] Nuclease subunit of the excinuclease complex
• TIGRFAM ID: [TIGR00194] excinuclease ABC, C subunit

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 0.866518
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATGGACC GTCCGGATCT CGCAGCGATT CCCGAGGCGC CAGGCAGCTA CCAGTTCCGC 
GATGGCGAGG ATCGGGTCAT CTACGTCGGC AAGGCGCGCA ACCTGCGCGC GCGGGTCGGA 
AGCTACTTCC AAGACCCCCG TCAGCTCTCG CCGAAGACGC GGGCGATGCT CGCGGTCGCG 
AGCCGGCTCA CCTGGATCGT GGTCCCGAGC GAGCAGGACG CCCTGCTCCT CGAGTACTCG 
CTCATCAAGG AACACCATCC GCGCTACAAC ATCCGCCTGC GAGACGACAA GTCCTACCCG 
ATGATCGCCG TGACGGTCGG GGAGCGCTGG CCGCGCGCGA TGATCTATCG AGGCAAGCGT 
CGACGTGGCG CCCGCTACTT CGGACCCTAC GCCGACGCCG GGGCCGCTCG CGAGGTCCTC 
GAGCTGTTGC GTCGGGCGTT GCCGCTGCGC ACGTGCTCGC CGGCCAAGCT TGCCCAGCAC 
GAACGGGCCG GGCGTCCCTG TCTCTACTTC GACATCGGAC GCTGCGTCGG GCCCTGCATC 
GGCGCCGTGG ACGAGGCAAC GTACCGAGGC CTGGTGGACG AGGTGACGGG GTTTCTCGAG 
GGCCGAGCCG GCTCGCTCGT CGACGCCCTC GAGACCGAGA TGCACGCCGC CGCCTCCCGC 
CTGGAGTTCG AAGAGGCCGC GAGGCTCCGC GATCGGCTCT CGGCGATCGA AGCGGTGCTC 
GAGCGCCAGT CGGTGGCGCT CGGGCACGAG CGAGACCTCG ACGCGATCGG GGTGCATCGC 
GACGAACTCG ATCTCTACCT CGAGGTCGTG CGCGTACGCC ACGGGCGCAT CGTGGGCGTG 
GGTGGCGCGC GGGCCGAGCG AGACTCGGGT GCGATGCTCT TCGACGAACT CCTCGACCTG 
GTTCGGAGCT ACTACGACGA CCAGGCCATC GACGTTCCCC CGAGGATCGT TGCGCGGGTC 
GAGGTCGCCG AGGCGAGGGA GGCGACGGAC GCCCTGACCT CGCTCCTTGG ACGCCCGGTG 
CGCGTCGTGA CGCCGTACCG TCGTGAGCTC GCCGTGCTCG TCGAGATCGC CGAGCGCAAC 
GCCGCCCTCG CGCACCAGCG TGCCCGCAGA GAACGCGCCA CTGACCTCGC GACGCGTTCG 
AGGGGCTTGA CCGAGCTCGG CGAGCTGGCG GGCCTTGGGG CGCCTCCGGT CCGCATCGAG 
TGCTTCGACA TGAGCCACCT GCAAGGGCGC TCCTACGTGG GGTCGATGGT GGTGATGGAG 
GACGGCCTCA TGCGCCACGG GGCCTATCGG CACTTCCGGG TCAGCGTGCC GCACAACGAC 
GACGTCGGGG CCATGCGCGA GGTGCTCTCG CGACGTCTCG ATCGTCTCGA TGACCGGCGC 
TTCGGTGGGC GCCCCGACCT CATCGTGCTC GATGGCGGGG CACCGCAGCT CAACGGCGTG 
CTGCGGCTGC TCGAGGAGCG CGGCATGGCC GGCACGGTGC CCGTGGTCGC GCTCGCCAAG 
TCGTTCGAAG AGCTCTATGT CCCCGATCGG AGCGAGCCGG TGCGCGTACC TCGCGGGACG 
CTCGCGCTCT ACCTGCTCCA ACAGCTCCGG GACGAGGCCC ATCGCTTCGC GATCACCTAT 
CACCGCCGGC GCCGCCAGCT CGATGCCGAG CGCTCCACGC TCGAGTCCAT CCCGGGACTC 
GGACCGGCGA GACGGGCGCG CCTGCTCGCC GAGTTCGGAT CGATCTACGA GATCGCCGAG 
GCAAGTGAGG CGGAGCTCGT CCGTGCGGGT GTGCCGGCTC GGGTGGCGAG TGCTGTCCGC 
GAGCGTCTCG GGCCGCTCTA TCGTCGAGAG CCTGAGAGCG ACCCCGATGA GGAGGTCAGA 
TGA 

 

Protein sequence

MMDRPDLAAI PEAPGSYQFR DGEDRVIYVG KARNLRARVG SYFQDPRQLS PKTRAMLAVA 
SRLTWIVVPS EQDALLLEYS LIKEHHPRYN IRLRDDKSYP MIAVTVGERW PRAMIYRGKR 
RRGARYFGPY ADAGAAREVL ELLRRALPLR TCSPAKLAQH ERAGRPCLYF DIGRCVGPCI 
GAVDEATYRG LVDEVTGFLE GRAGSLVDAL ETEMHAAASR LEFEEAARLR DRLSAIEAVL 
ERQSVALGHE RDLDAIGVHR DELDLYLEVV RVRHGRIVGV GGARAERDSG AMLFDELLDL 
VRSYYDDQAI DVPPRIVARV EVAEAREATD ALTSLLGRPV RVVTPYRREL AVLVEIAERN 
AALAHQRARR ERATDLATRS RGLTELGELA GLGAPPVRIE CFDMSHLQGR SYVGSMVVME 
DGLMRHGAYR HFRVSVPHND DVGAMREVLS RRLDRLDDRR FGGRPDLIVL DGGAPQLNGV 
LRLLEERGMA GTVPVVALAK SFEELYVPDR SEPVRVPRGT LALYLLQQLR DEAHRFAITY 
HRRRRQLDAE RSTLESIPGL GPARRARLLA EFGSIYEIAE ASEAELVRAG VPARVASAVR 
ERLGPLYRRE PESDPDEEVR