| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Afer_0820 |
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| Symbol | |
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| ID | 8322883 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidimicrobium ferrooxidans DSM 10331 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013124 |
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| Strand | - |
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| Start bp | 836177 |
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| End bp | 839371 |
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| Gene Length | 3195 bp |
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| Protein Length | 1064 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 644951954 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_003109439 |
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| Protein GI | 256371615 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.530958 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCGTCG TCGACCCCGC GCTCGAGCGA CCGTCAGCGG TCCTCGAGCT CGTGCTGCAG
GCCTTCCAGG CCCAGCGGGT GCTCCGGCGC GCCGACGGAC GAAGCTTCGA GGAACGCCTC
GCCGACGCCC TCGAGACCTT GTGTGTCCCA CCCACGCTCG CCGGGTTCTG GGCGCGCCTC
GATCCCGGAG AGCACCACGC GACCATTCTC GCCACCAGTG GCACGGCCAA GGCGTACTGT
GCGGACCTCG AGCTCTCCGA CGACCCCACC TCGCTCTCGG GGCAGGGGCC GGCGGGCACG
ACCCTCCGGT CGCTCTCCCC CGTCGTGGCC ACGGTCGACG ATGCGATCTT TGCGCCCTGG
CGTGAGCGAG CCCGACCCTT CGGCATCGAA GGTTCGCTCT CGGCGGCCGC GGCCTGCGAC
GACGGGACCC GCTATCTCCT CTCGCTCTAC CGCTCCGACC TGGCGCGCCT GCCCCCCGAG
ACGGCGCTGG TGCTCGACGC CCTCGCCCAG GCCGCAGCCG AGCTCCACCA AGAGCAGCGT
CGCGCGCGGG CGCGCGAGCT CGAGGCGGCG ACGGATCGAC TGGTCGCCTG GCTCCGCTCC
ACCACCGACC AACCTCCCGA GTCGACGATC CTCGAGCTCG CGCGCCACCT CGCCGAGCTG
CCCGGCGTTG GTGCTGTCGA CGCGCTCGCC ACGAGCGACG GGGAGCGACG CTTCGAGCGC
CTCGCCACCT ACGGGACGAT GCGCAGCGTC GTCGGACTGC TCCCCGAACC ACGAACCGAC
GGCACACAGC TCACCATCCC CGACCTCGCG CGCGACGCGC GCCGCTGCTA CGTGGTGCGC
CGACCGGCCT CCCACCTCGA GCTCCCCGAC CACTGGCGAG CCGAACCACG CCTCCGCCAG
GTGCCGCTCG CGGTCGCGAT CCCGCTCGTC CTCGCCGACG AGGTCCGAGC AGTGCTCGTC
GCGCTCGTCG AACCCGGGGC GCCCGACCCC GAACGGATCG CCGCGCTGCT CGAGCAGATC
GGACGCACGG CGACCGAGGC GCTCGAGACC GCGGCCGGCT TCGCAGAACG CGTGGCGCTC
GCGGCACTCT TCGACGCGCT CGCAACCGGC TCGGATCGCC TCCTTGCCTG TCGGACCGAG
ACCGAACTCG CCGACGTCAC GACGAAGAGC CTCGTGGACA CAGGCGTCTT CGACCTTGCG
GCGCTCGTCG CCGGTTCGAC GACGCTCGGG CTCTCGCGCT CGTCCGAGCG CGACCTCGCC
GCCCCGTGCC GCACCGCCTT GTCACGTCTG TGCGAGCGAG TGCGACGCGA AGGTCACTCC
GGACAGGTCC GCCTCTCGCC ACGACCCGTC CGATGGGCCG AAGCCCGTGC CGGTGCCGAA
GACTGGCTGT TCGCCACCCC GGTCCCCGAC GCCACCGACC TCGTCCTGTG CGCTCGAGCC
GTGCGCAGCC CGGTCAGTGG CAATCGCGAG TTGCTGCTGC TCGAGCGCGT TGCCGCCAGC
CTCGCGGCCC AGCGAGCACG CATCCGCCTC GAGGCGACCT TGCGCGCCGA ACGCGATGCC
CAACGGACCG TCGCGCTGCG CGACGCGCTG ACCGGCCTGC CGAACCGACG GGCGTTCCTC
GAAGAAGCCG AGGCACGCTG CCGTCGCGTC GAAGAGGACG GTGTCGGCCT CGCACTCGGC
ATCCTCGACC TCGACGGGTT CAAGGAATGG AACGACGTCT ACCGACACTC CGAGGGCGAC
CGCATCCTTG CCGAGGTCGG CGCGTCGCTC GCCGCACTCC CTCCTGAGCT CTACGTGGCG
CGCCTCGGCG GCGACGAGTT CGGACTCCTC GCGCGCCTCG ACAGCATGGA TCTCGGGACC
CTGTCGCAGG CGGTGCACGC CGCGGCCGCC GTGCCCACCC CCGGCGGACC GCTCAGCGCG
AGCCTCGGTT GGGCGCTCTG GGGTCCTGTC GGCGTCGACG TGGAGACGCT GCTCGCGCAC
GCCGACGAGG CCATGTACCA CGCCAAGAGC CAGGGTGGAG GTCGCACACG CATCTTCGAA
GACGAGATGG CAAGGCTTGC CGATCGTCGC CACCGTCTGC GCACGAAGCT CGCCTCGGCG
ATCGGCACCG ACCAGGTCCG CTTCTGGTAT CAGCCCCAGG TCGACCTCGT CGCGGGCCGT
CTCGCCGGCG TCGAGCTCCT CGCGCGTTGG TACGACGGGG CAGAGGTCGT CCCCGCGGAT
GCGTTCATGG ACGTGGTCGA GCGCGATGCA TACCTGGCCC GACGCCTCGA CCTGGACGCG
CTCGAGCACG CCTGCACGCT CCTCGCCGAG CGCCCCTCAC TGCCCGCCGT GGCCGTCAAC
ATCGCGGCGC GTCACCTCCT CACGCCCACC TTCGCGGCCG ACGTCGCGCG CGTCATCCGC
ACCGCATCGA CCGAGCGCCT CGTCCTCGAG ATCACCGAGG CCCACTCGCT CGGTGACGAT
CTCGCGAGCG CGGTGAGTCG GCTTGAGGCG ATCCGGGCCC TCGGGGCTCG CATCGCGATC
GACGACTTCG GCCGAGGCTG GGCGTCGATG GCCTACGTCC ACAGCCTCCC CATCGACCAG
CTCAAGGTCG ACCGCTCGCT GGTGGCCTCC CTCGCGACGG ACCCACGGTC GTTCGCAAGC
TCGCTCTCTG CACTCGCGCT CGGGAGCTAC GCCGGGGTCG AGGTCGTCGG CGAAGGGATC
GAGACCACCG AGGACCTCGC CATGTGGCGA GCGATTGGGG GACGCTTCGT CCAAGGCTAC
GGACTCGGTC GTCCACAACC GACGGTCCCG ACCAGGCTCC GCTCCGGTGC ACGGGCGCTC
CTCGCCTCCA TCGCGCCCTT CCCCCTCGAC GACCTGCCCC TGCTGGCGAG CCTCGTCGCA
GCACGCGCCG GTCGGCCCCT TGCGCACCAG CGTGACGAGC GCTGCCCCAT CGCCTCGTGG
CTCCGCCAGC GAGAGGGACG CTACGGCGAT CTTGCGAGCT TCGAGGAGCT CGCCGAGGTC
CACGAACACC AGTGCGGCCG GGCCGACGAA CCCGTCGGCC TCAAGGAGCT ACTCGAGCGC
CTCGTCGCTG CCATCACCGC CGAGCGCACG AACCCCGCGA GGCGATCGGG CGCTCGACGC
GAGCGAGGCG GCAGGCACAC GCCTGCCGCC TCGGGACTGG CATCTGGACG CTCGTCGTCC
GACGACGCCC GCTGA
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| Protein sequence | MSVVDPALER PSAVLELVLQ AFQAQRVLRR ADGRSFEERL ADALETLCVP PTLAGFWARL
DPGEHHATIL ATSGTAKAYC ADLELSDDPT SLSGQGPAGT TLRSLSPVVA TVDDAIFAPW
RERARPFGIE GSLSAAAACD DGTRYLLSLY RSDLARLPPE TALVLDALAQ AAAELHQEQR
RARARELEAA TDRLVAWLRS TTDQPPESTI LELARHLAEL PGVGAVDALA TSDGERRFER
LATYGTMRSV VGLLPEPRTD GTQLTIPDLA RDARRCYVVR RPASHLELPD HWRAEPRLRQ
VPLAVAIPLV LADEVRAVLV ALVEPGAPDP ERIAALLEQI GRTATEALET AAGFAERVAL
AALFDALATG SDRLLACRTE TELADVTTKS LVDTGVFDLA ALVAGSTTLG LSRSSERDLA
APCRTALSRL CERVRREGHS GQVRLSPRPV RWAEARAGAE DWLFATPVPD ATDLVLCARA
VRSPVSGNRE LLLLERVAAS LAAQRARIRL EATLRAERDA QRTVALRDAL TGLPNRRAFL
EEAEARCRRV EEDGVGLALG ILDLDGFKEW NDVYRHSEGD RILAEVGASL AALPPELYVA
RLGGDEFGLL ARLDSMDLGT LSQAVHAAAA VPTPGGPLSA SLGWALWGPV GVDVETLLAH
ADEAMYHAKS QGGGRTRIFE DEMARLADRR HRLRTKLASA IGTDQVRFWY QPQVDLVAGR
LAGVELLARW YDGAEVVPAD AFMDVVERDA YLARRLDLDA LEHACTLLAE RPSLPAVAVN
IAARHLLTPT FAADVARVIR TASTERLVLE ITEAHSLGDD LASAVSRLEA IRALGARIAI
DDFGRGWASM AYVHSLPIDQ LKVDRSLVAS LATDPRSFAS SLSALALGSY AGVEVVGEGI
ETTEDLAMWR AIGGRFVQGY GLGRPQPTVP TRLRSGARAL LASIAPFPLD DLPLLASLVA
ARAGRPLAHQ RDERCPIASW LRQREGRYGD LASFEELAEV HEHQCGRADE PVGLKELLER
LVAAITAERT NPARRSGARR ERGGRHTPAA SGLASGRSSS DDAR
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