Gene Afer_0818 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAfer_0818 
Symbol 
ID8322881 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidimicrobium ferrooxidans DSM 10331 
KingdomBacteria 
Replicon accessionNC_013124 
Strand- 
Start bp835088 
End bp835735 
Gene Length648 bp 
Protein Length215 aa 
Translation table11 
GC content71% 
IMG OID644951952 
ProductUracil-DNA glycosylase superfamily 
Protein accessionYP_003109437 
Protein GI256371613 
COG category[L] Replication, recombination and repair 
COG ID[COG1573] Uracil-DNA glycosylase 
TIGRFAM ID[TIGR00758] uracil-DNA glycosylase, family 4 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.0737592 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCCACGG CACTCGAGCA GCTCGCTCAG GACATCCTCA CGTGCTGTCG ATGCGATCGT 
CTCGTCGAGT GGCGGCGAAC CACCAGCCAA TCCGACTGGG TCGCCCTCCC GGTGCCAGGC 
TTCGGCGATC CGGCTGCTCG CATCCTCGTC GTCGGCCTCG CGCCGTCGCG CCGAGGGGCG 
AACGCGCACG GCCGCATGTT CACCGGCGAC CCGTCGGCCG CCTTCTTGAC CGCAGCGCTG 
TGGCGACTCG GCCTTGCGAA TCAGCCGACC TCGACCAGTC GCGACGACGG CCTTGTCCTC 
ACCGACGTCT GGCTGAGCGC CGCCGCTCGC TGCGCACCCC CCGACAACCG GCCTCGTGCT 
GGCGAGCTCG CCGCCTGCAG ACCCTACCTC GTCCGCGAGC TCGAGCTCGT GCCGTGGCGA 
AGCGCGGTCG CGCTCGGTGC GATCGCATGG TCGGCTCTGG CCGCAGCGCT CGGCGAGCCG 
CTCGGCCGGT TCCGACATGG AGAACGCATC GAACTCGGAC GTGGCCGCCT CGTCCTCGCG 
AGCTACCACC CGAGTCCGCA GAACACCGCG CCTCGACGCC TCACGCCAGC CATGCTCGAC 
ACCGTGCTCG CCGACGCCCT GGCTCACGCA TCAGCAGCGA CGACGTGA
 
Protein sequence
MATALEQLAQ DILTCCRCDR LVEWRRTTSQ SDWVALPVPG FGDPAARILV VGLAPSRRGA 
NAHGRMFTGD PSAAFLTAAL WRLGLANQPT STSRDDGLVL TDVWLSAAAR CAPPDNRPRA 
GELAACRPYL VRELELVPWR SAVALGAIAW SALAAALGEP LGRFRHGERI ELGRGRLVLA 
SYHPSPQNTA PRRLTPAMLD TVLADALAHA SAATT