| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Afer_0792 |
|---|
| Symbol | |
|---|
| ID | 8322854 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidimicrobium ferrooxidans DSM 10331 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013124 |
|---|
| Strand | + |
|---|
| Start bp | 801844 |
|---|
| End bp | 803199 |
|---|
| Gene Length | 1356 bp |
|---|
| Protein Length | 451 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 644951927 |
|---|
| Product | phospho-2-dehydro-3-deoxyheptonate aldolase |
|---|
| Protein accession | YP_003109413 |
|---|
| Protein GI | 256371589 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG3200] 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase |
|---|
| TIGRFAM ID | [TIGR01358] 3-deoxy-7-phosphoheptulonate synthase, class II |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.616479 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACGCGC TTGACGACGC CGGTTGGCAG CCGTGGGACT GGCAGCAGCG TGTGGCCGCG
CAGCAGCCCG AGTGGCCCGA TCCCGAGGCG TTGGACGCGG TCATCAAGGA GTTGGCTCAG
CGCCCAGCCC TCGTGGTCGC CAAGGACGTC GACCGGCTAC GAGCCGCACT GGCGCGTGCG
GCCCGTGGAC GTGCCTTCGT GCTCCAAGCC GGTGACTGCG CGGAGAGCTT CCACGATCAC
TCCGCGAGTT CGCTGCGCGC CAAGCTGAAG ATCATCTTGC AGATGGCCGT GGTCCTGACC
TACTCGTCGG GCGTGTCGGT GGTCAAGATC GGGCGTATCG CCGGCCAGTT CGCCAAGCCG
AGGTCGGCGC CCGTCGAGGT CGTCGACGGG GCGACCTTGC CGTCGTTTCG CGGGCACATC
GTCCATGATG ACGCCCCGAC ACTGGACGCG CGTCGTCCCA ACCCCGAACG CCTACTCTGG
GCCTACGATC AGTCCCGAGC GACGGTGAGC GTGTTGCGAG CCCTCACCGA GGGGGGCTTC
GCGGATCTCT CCGGGGCGCA TCGGTGGAAC CTCGACTTCG TCGCCTCGTC GCCGGAAGGG
CAGCGCTACC AGGCGATCGC CGATGGGGTC GATCGGGCAC TTCGCTTCAT GGCAGGCTGC
GGGATCGATC TCGAGCGCGA GGCCGTTCTG CACCAAGTGA ACGTGTGGAC CTCGCACGAG
GCGCTCTTAC TGCCCTACGA GGCGGCGCTC ACCCGGCGCG ATCCTGCCTC GCAGCGCTAC
TACGACCTCT CGGCCCACAT GGTCTGGGTG GGCGAGCGCA CGCGCCAGCT CGACGGCGCA
CACCTGCGTT TTGCATCGGG GATCGCCAAT CCGGTCGGAC TGAAGGTCGG CCCCACGATG
GAGCCCGACA CCCTCGTCGA GGCCTGCCGG ATCCTCGATC CTGATCGGAC GCCGGGTCGG
CTGGTGCTCA TCTCACGCAT GGGTCACGAC GCCGTGCGTG ATCGCCTCGG AGGTCTCGTC
GAGGCCGTAC GTGAGGCGGG CTATCCGGTG GTGTGGCTGT GCGATCCGAT GCACGGCAAC
ACCTTCGTCT CCCAGTCAGG CTACAAGACG CGCCGCTTCG AGGACGTGAT GGACGAGATC
GCCGGTTTCT TCGAGGTCCA TCGACGGCTT GGTACCCACG CAGGTGGGAT CCACCTCGAG
CTCACCGGAG AGGACGTGAC GGAGTGTCTT GGCGGCTCGG AGGCGGTGCT CGAGTCGGAA
CTGTGTCGTG CCTACGACAC CATCTGCGAT CCTCGGTTGA ACGCGCGCCA ATCACTCGAC
TTGGCGTTTC GCGTCGCTGA ACTCCTGATC CGCTGA
|
|---|
| Protein sequence | MNALDDAGWQ PWDWQQRVAA QQPEWPDPEA LDAVIKELAQ RPALVVAKDV DRLRAALARA
ARGRAFVLQA GDCAESFHDH SASSLRAKLK IILQMAVVLT YSSGVSVVKI GRIAGQFAKP
RSAPVEVVDG ATLPSFRGHI VHDDAPTLDA RRPNPERLLW AYDQSRATVS VLRALTEGGF
ADLSGAHRWN LDFVASSPEG QRYQAIADGV DRALRFMAGC GIDLEREAVL HQVNVWTSHE
ALLLPYEAAL TRRDPASQRY YDLSAHMVWV GERTRQLDGA HLRFASGIAN PVGLKVGPTM
EPDTLVEACR ILDPDRTPGR LVLISRMGHD AVRDRLGGLV EAVREAGYPV VWLCDPMHGN
TFVSQSGYKT RRFEDVMDEI AGFFEVHRRL GTHAGGIHLE LTGEDVTECL GGSEAVLESE
LCRAYDTICD PRLNARQSLD LAFRVAELLI R
|
|---|
| |