| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Afer_0660 |
|---|
| Symbol | |
|---|
| ID | 8322720 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidimicrobium ferrooxidans DSM 10331 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013124 |
|---|
| Strand | + |
|---|
| Start bp | 669789 |
|---|
| End bp | 670604 |
|---|
| Gene Length | 816 bp |
|---|
| Protein Length | 271 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 644951799 |
|---|
| Product | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylateN- su ccinyltransferase |
|---|
| Protein accession | YP_003109287 |
|---|
| Protein GI | 256371463 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2171] Tetrahydrodipicolinate N-succinyltransferase |
|---|
| TIGRFAM ID | [TIGR00965] 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCGAGG ACGCGCGTGC GGCCAGCGTG CATGGCGCGT TCGCACATGG CGAACCGATC
GATACCGCGG TGCTCGTCTC GGTGTTCGAG GACCTCGAGC GCGGCGCGCT GCGGGTGGCC
TCCGTCGACT GGGACGAGGG CCGGGTGGTG GTGCACGAGT GGGTCAAGGA GGCGATCCTG
CTCTCGTTCG GCCACTGGCC ACTCGTGGAG TCCGAGGCCG GCCCGCTCAC CTGGGTCGAT
CGCATCCCGC TGCGGCGCGA TCTCGCCGAA GCGCGGGTAC GTGCGGTGCC CGGGGCGATC
GTGCGGCGAG GGACCTATCT CGGCGCGGGT GTCACGCTCA TGCCGAGCTT CGTGAACGTC
GGCGCCTCGG TCGGTGAGTC GACGATGGTG GACACCTGGG CCACGGTGGG CTCGTGTGCC
CAGATCGGCG CCCGTGTCCA CCTCTCGGGA GGCGTGGGCA TCGGCGGGGT CCTCGAGCCG
CCGCAGGCCG CTCCCGTCGT GGTGGGTGAC GACGCCTTCG TCGGCTCGCG CGCGATCGTG
GTCGAGGGCT CGATCGTCGG GCGGGGCGCG GTGGTGGCCG CCGGGGCGGT GGTGACCCCG
ACGATTCCGA TCATCGACGT CGCCACCGGC GACGAGCTTG AGCGCGGCAG GGTGCCCGAC
TGGTCGGTCG TTGTGCCCGG CACGCGAGAG CGCCGTTGGC CCGGTGGGAC CTTCGGCCTC
GCGGCTCTGC TCGTGATCGC GCGGCTGCCC GAGGGGGAGC GCCACGAGAA GGCCGCGCTG
AACGACCTCC TGCGCGCGCA CGGCGGAGCC CTGTGA
|
|---|
| Protein sequence | MTEDARAASV HGAFAHGEPI DTAVLVSVFE DLERGALRVA SVDWDEGRVV VHEWVKEAIL
LSFGHWPLVE SEAGPLTWVD RIPLRRDLAE ARVRAVPGAI VRRGTYLGAG VTLMPSFVNV
GASVGESTMV DTWATVGSCA QIGARVHLSG GVGIGGVLEP PQAAPVVVGD DAFVGSRAIV
VEGSIVGRGA VVAAGAVVTP TIPIIDVATG DELERGRVPD WSVVVPGTRE RRWPGGTFGL
AALLVIARLP EGERHEKAAL NDLLRAHGGA L
|
|---|
| |