| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Afer_0511 |
|---|
| Symbol | |
|---|
| ID | 8322570 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidimicrobium ferrooxidans DSM 10331 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013124 |
|---|
| Strand | - |
|---|
| Start bp | 515385 |
|---|
| End bp | 516950 |
|---|
| Gene Length | 1566 bp |
|---|
| Protein Length | 521 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 644951662 |
|---|
| Product | signal transduction histidine kinase regulating citrate/malate metabolism |
|---|
| Protein accession | YP_003109151 |
|---|
| Protein GI | 256371327 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3290] Signal transduction histidine kinase regulating citrate/malate metabolism |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0671541 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGTGACG ATCCGTCGGT CTCGAGAGGT AGGCGGGGCG CGAAGCTCGC CTCTCGCATG
CTGGCCATCC AGGCCGGGAT CATTCTGGTG AGCGTCATTG CAGCGATCGC GTGGGTGACG
CTCGAGGTCC CGACTGGGCT CGGATCCGAC ACACATCAGG CGCTCCTTGC GGCACAGAGC
GTCGCTGCGA ACCCAGATAT CGCCACCCTC GAGTCCGGAA CGGAGAACCG ACAAGCCCTC
CTCACACAGT CGCGCAGGGC CATTGGCGCG CTCGCCGTGG CAGTCGTGAA TCGCCATGGT
CTCGTCGAGG CGGGGAGTGG ATCACTCACT CGTGGTCAGC TCGTCGCCGA GCTCGACGGA
CGAAACGTCT GGAGTGGCGT CCTCAACGGC GGTTCCGGAC CCGTCGCTGC GCGAGCCCCG
ATCTCGCACT CGGCTGGTCT CGGAGTCGTC GTCGAGTTCT CGGCGCCTAA CCCACTTGCC
CTCATCACCG GATCCGCAGT GCGTGCGCTC GAAGCGCTCA CCGTGGCACT GGCCATCGGT
GCAGCAGGAT CGTGGCTGGC GAGCCGATGG CTTCGCGATC GCACCTTTGG CCTCGAGCTC
GACGAGCTGA CCAAACTCAT CCAGGAACAG GACGCGATTT TCCACGGCAT CCGGGAGGCG
GTTGCGGGGA TCGATCCCGA GGGAAGGTTC CAGTTCGCCA ACGAGGAGGC CCGCCGCCTC
CTACACCTTC CAGTAAGGTT CCTCGAGCGC CCTGTCGGCG TGCTGGTGCC AGATGGTCGA
CTCCAAGGCA TTCTGACGGG CGAGGTCGTG GGCAAGGACC TGCTCGTCGT CCACGAGGAT
CGAATCCTGA TCGCCAATCG TCGAGCCGTC GAGGTGCAAG GGCGCCTACT CGGCTATGTC
GTCACGCTCG TGGACCGCAC CGAGTCCGAG GCACTGCTGC GCGAGCTCGA CGGCATGCTC
GGACTCACCG ACGCGCTTCG AGCACAGGCG CACGACTTCT CCAACCGGAT CCACACCGTC
GTCGGCCTCA TCGAACTGGG AGAGACCGAT GAGGCCATCC GATTCGCCAC CGACATCGCA
CTTCGTGACA CCGCGCTCAT GGATCGCCTG GCCCGCGAGG TGGGCAATCC CGTCATCGTG
GCGCTCCTGT TGGCGAAGAG TGCAGTGGCT GCCGAGCGTC ACGTCGAGCT ACGCCTCGGA
CCTTCCGACC GCGTGCCGCC CGAGTGCATG CCCGCGAGCG ATCTCGTCAC ACTGCTCGGC
AACCTGATCG ACAATGCGAT CGATGCAGCT GCAGATACTC CCAACGCCTG GATCGAGGCG
AGCTTTCTCG CCATGGGAGA TGCGCTCACC ATGATCGTCG CCGACTCAGG TCCAAGGGTC
CCAGCCCACA TCGCCTCAGA GATCTTTCTC GACGGCTTCA GCACCAAGCT CACGCGCAGT
GGGACACGCC GGGGGCTTGG CCTCGCCCTC GTACGGCTGA GGTGCCCCAG ATTTCGTAGA
CACCCAGGTT ACTTCACGCG AGCCTCCTCC GCGACGAGGT GCTCGAAGAC GACTGGGGCA
AGGTAG
|
|---|
| Protein sequence | MRDDPSVSRG RRGAKLASRM LAIQAGIILV SVIAAIAWVT LEVPTGLGSD THQALLAAQS
VAANPDIATL ESGTENRQAL LTQSRRAIGA LAVAVVNRHG LVEAGSGSLT RGQLVAELDG
RNVWSGVLNG GSGPVAARAP ISHSAGLGVV VEFSAPNPLA LITGSAVRAL EALTVALAIG
AAGSWLASRW LRDRTFGLEL DELTKLIQEQ DAIFHGIREA VAGIDPEGRF QFANEEARRL
LHLPVRFLER PVGVLVPDGR LQGILTGEVV GKDLLVVHED RILIANRRAV EVQGRLLGYV
VTLVDRTESE ALLRELDGML GLTDALRAQA HDFSNRIHTV VGLIELGETD EAIRFATDIA
LRDTALMDRL AREVGNPVIV ALLLAKSAVA AERHVELRLG PSDRVPPECM PASDLVTLLG
NLIDNAIDAA ADTPNAWIEA SFLAMGDALT MIVADSGPRV PAHIASEIFL DGFSTKLTRS
GTRRGLGLAL VRLRCPRFRR HPGYFTRASS ATRCSKTTGA R
|
|---|
| |