| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Afer_0479 |
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| Symbol | |
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| ID | 8322538 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidimicrobium ferrooxidans DSM 10331 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013124 |
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| Strand | - |
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| Start bp | 481469 |
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| End bp | 483376 |
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| Gene Length | 1908 bp |
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| Protein Length | 635 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644951630 |
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| Product | deoxyxylulose-5-phosphate synthase |
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| Protein accession | YP_003109119 |
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| Protein GI | 256371295 |
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| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
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| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCCTACG AACTACTTGA TCGAATCAAG GGGCCAGAGG ACCTCCGCTC GCTCACCCCC
GCCCAACGGA CGGCGCTCTG TGCCGAGCTG CGCGAACGCA TCGTGACGAC CGTGCTCGCG
AACGGTGGCC ACCTCGGCTC CAACCTCGGA GCGGTGGAGC TCACCATCGC GCTCCATCTC
GCGTTCGACT CGCCCCGTGA CGCCATCCTC TTCGACACCG GGCACCAGAC CTATCCCCAC
AAGCTGCTCA CCGGGCGTCA CGCGATCTTC GACACGCTCC GCCAGCAAGG GGGGCTGTCC
GGCTACCCGA ATCGCGCCGA GAGCGAGCAC GACTGGATCG AGAACTCCCA CGCCTCCACG
GCACTGTCGT ATGCCTACGG GATCGCCGCT GGCTTCGACC TCACCGGCAG CGCACCACAC
CGCCGGGTGG TCGCGGTGGT CGGCGACGGC TCGCTCACCG GCGGGCTCGC CTACGAAGCG
CTCAACACCA TCGGTCACCG CAAGCTCCCG ATCATCATCG TCTGGAACGA CAACGGCCGC
TCGTATGCCC CCACGATCTC CCGACTCTCG TCGTCGCTCA CCCGACTGCG ACTCAACCCC
ACCTACATGT CGGCGCGCAA CCGCGTCAAA CAGGTCATCT CGGACATTCC TCGTGTCGGC
CCTCGTGCCG CATCCCAGAT CGCCTCGGTG ACCGCCGCGC TGCGCGAAGC GATCGAGCCG
CGGGTGTTCT TCGAGGCCCT CGGGATTCGC TACGCCGGGC CCGTCGACGG TCACGACATC
GACGAGCTCG TCTACGCCTT CGAGGGGGCC AAGGAGTGGG ACGGGCCGAT CGCCGTACAC
GTGCTCACCG AGAAGGGCCG GGGCTACCAG CCAGCGGTCG ACGACGAGGT GCAGCGCATG
CACGACCTCA AGGTGCCACG AGCGCTCACG ACCATCGAGG GGGCCGAGCC GGTCTCGTTC
ACCGAGGCGT TCAGCCGCGC GCTGGTGGAT GCCGGCGAAC GCGATCGGCG TGTCGTCGCG
ATCACGGCTG CGATGGGCGC TCCCACGGGG CTCCTGCCGT TCCAGGAACG CTTCGGTGAT
CGCTACTTCG ACGTCGGCAT CGCCGAGGCG CACGCCGTCA CCGCCGCAGC GGGGATGGCG
ATGGTCGGGC TGCGCCCGGT CGTCGCGATC TACTCGACCT TCCTCTCTCG GGCGTTCGAC
CAGGCCAACC TCGACGTCGG TCTGCACCAC CTCCCCGTCG TCTTCGTCGC CGATCGCGCC
GGGATCACCG GCGACGACGG ACCGAGTCAC CATGGCGTCC TCGACCTCGT CGAGATGCTC
GCGATCCCCG ACGTCACGAT CTTTACGCCG TCGAGCGCCG ACGAGGTGCG CATCGCCCTC
GAGGAGGCGC TCAAGCTCGA CGGCCCGAGC CTGATCCGCT TCTCGAAGAC ACCGGGTCCC
CGGCGCATCC GCGGCGGCGT CGGCACGGGC CTTGGCGCTC GGGTGGTGCG CGACGCGGGA
TCTGGCCTCG TGATCGTCGC CTACGGCAAG ATGGTGACGC CCGCGCTCAC CGCAGCCGAC
CTCCTCCACG ACGATGGCCT CGAGGCGACG GTGATCGACC CACGGGTCGT CCGACCGATC
GACCCCGACC TCATCGCCCT CGCCAGTTCG GCCGATGCGG TCGTCACCGT GGAAGACGGC
TACGTCCACG GCGGCGCCGG CGCGTTCCTC GCCGATGCGC TGCGCGCCGT GCGCCCGACC
ATCCCCGTCG CGACGCTCGG GATCCCGACG CGCTACATCC ACCACGGTCC CCCCGACGCG
CTCCTCGCCG ATCTCGGCCT CGACGGCTTC GGGATCGCCG CCAAGATCCG CACCTGGCTC
GGCGCGCACG AATCGGCGAC CCCCGAGATC ACGTCGGATC CGGCCTAG
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| Protein sequence | MSYELLDRIK GPEDLRSLTP AQRTALCAEL RERIVTTVLA NGGHLGSNLG AVELTIALHL
AFDSPRDAIL FDTGHQTYPH KLLTGRHAIF DTLRQQGGLS GYPNRAESEH DWIENSHAST
ALSYAYGIAA GFDLTGSAPH RRVVAVVGDG SLTGGLAYEA LNTIGHRKLP IIIVWNDNGR
SYAPTISRLS SSLTRLRLNP TYMSARNRVK QVISDIPRVG PRAASQIASV TAALREAIEP
RVFFEALGIR YAGPVDGHDI DELVYAFEGA KEWDGPIAVH VLTEKGRGYQ PAVDDEVQRM
HDLKVPRALT TIEGAEPVSF TEAFSRALVD AGERDRRVVA ITAAMGAPTG LLPFQERFGD
RYFDVGIAEA HAVTAAAGMA MVGLRPVVAI YSTFLSRAFD QANLDVGLHH LPVVFVADRA
GITGDDGPSH HGVLDLVEML AIPDVTIFTP SSADEVRIAL EEALKLDGPS LIRFSKTPGP
RRIRGGVGTG LGARVVRDAG SGLVIVAYGK MVTPALTAAD LLHDDGLEAT VIDPRVVRPI
DPDLIALASS ADAVVTVEDG YVHGGAGAFL ADALRAVRPT IPVATLGIPT RYIHHGPPDA
LLADLGLDGF GIAAKIRTWL GAHESATPEI TSDPA
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