Gene Afer_0426 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAfer_0426 
Symbol 
ID8322485 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidimicrobium ferrooxidans DSM 10331 
KingdomBacteria 
Replicon accessionNC_013124 
Strand
Start bp426272 
End bp427210 
Gene Length939 bp 
Protein Length312 aa 
Translation table11 
GC content64% 
IMG OID644951578 
ProductDNA-directed RNA polymerase, alpha subunit 
Protein accessionYP_003109067 
Protein GI256371243 
COG category[K] Transcription 
COG ID[COG0202] DNA-directed RNA polymerase, alpha subunit/40 kD subunit 
TIGRFAM ID[TIGR02027] DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCTTGTCA TGCAACGCCC CACGGTCGAG TCGCTCGGTG ACGAGGTCGA CAATCGTCAA 
CGGTTCGCCA TCGGACCACT CGAGCCAGGG TTCGGCCACT CGATCGGGAA CGCGCTGCGG
CGTGTGCTCA TCTCGTCGGT CCCGGGCGCG GCCATCACGC AGGTCCGTTT CGATGATGCG
CTGCACGAGT TCACGACGAT CCCCGGGGTG AAGGAAGATG TGATCGACAT CATCTTGAAC
CTCAAGGACA TCGTGTGGCG TTCGTGGAGT GAAGAGCCGG TCACGGTGAG GCTCGACGTT
CGTGGCCCCA AGGAGGTCAC GGCGGGAGAC TTCATGCTCC CCTCCGACGT GGAGGTCATC
AACCGCGATC TCCATATCGC TTCGGTGTCG GAGCACGGTC GGTTGGGTCT CGATGCGGTG
GTCGAGCAGG GGCGCGGCTA CGTGTCGGCG GAGGGCAACA AGCGCACCAC CACCATCGGC
ATCATCGCGA TCGACGCGAT CTTCTCCCCT GTGCGTCACG TCAACTACCG CGTCGAGCCG
GTTCGTGTCG GTCAGTCGAC GGACTTCGAC CAGGTGGTGC TGGAGGTCGA GACCGATGGC
TCCGTGACGC CACGGGAGGC CGTCGCCTCT GCGGCCCGGA CGCTCACCAG CTTGTTCGGC
CTCGTCGCCG AGCTCGCGAC CGACGTCAAT GCGCTCGAGG TCGCCGCGAC CGCCGACGAC
AGCGTGCGAC CGGCCGAGTA CGACCTCCCC ATCGAGGAAC TCGAGCTCAC GGAGCGGCCG
CGGAACTGCT TGAAGCGGGC GAGCATCAAC ACCATCGGTG ATCTGGTCGA GCGCACCCCT
GAGGATCTGT TGTCGATCAC GAACTTCGGC CAGAAGTCGC TCGACGAGGT CGTCGAGCGC
TTGACCCAGC GCGGACTTGA GTTGAGGAAG AGGGACTGA
 
Protein sequence
MLVMQRPTVE SLGDEVDNRQ RFAIGPLEPG FGHSIGNALR RVLISSVPGA AITQVRFDDA 
LHEFTTIPGV KEDVIDIILN LKDIVWRSWS EEPVTVRLDV RGPKEVTAGD FMLPSDVEVI
NRDLHIASVS EHGRLGLDAV VEQGRGYVSA EGNKRTTTIG IIAIDAIFSP VRHVNYRVEP
VRVGQSTDFD QVVLEVETDG SVTPREAVAS AARTLTSLFG LVAELATDVN ALEVAATADD
SVRPAEYDLP IEELELTERP RNCLKRASIN TIGDLVERTP EDLLSITNFG QKSLDEVVER
LTQRGLELRK RD