Gene Afer_0398 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAfer_0398 
Symbol 
ID8322457 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidimicrobium ferrooxidans DSM 10331 
KingdomBacteria 
Replicon accessionNC_013124 
Strand+ 
Start bp412223 
End bp412864 
Gene Length642 bp 
Protein Length213 aa 
Translation table11 
GC content67% 
IMG OID644951550 
Productribosomal protein L3 
Protein accessionYP_003109039 
Protein GI256371215 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0087] Ribosomal protein L3 
TIGRFAM ID[TIGR03625] 50S ribosomal protein L3, bacterial 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCGAGGA AGACGTTTGT CGGTGAGAAG GTCGGTATGA CCCAGGTCTG GACCGAGGGT 
GACCGTGCCG TCCCGGTGAC GGTGATCAAG GTCGTCCCGA CGTGGGTCGT GCGGACGAAG 
ACGCCGGAGC GAGATGGGTA CGAAGCGGTG CAGGTCGCGG TGGGTCGCGT CAAGCCGCAG 
CGGCTGAGTC GTCCGGTTGC GGGTCAGTTC GAGGCCCGAG GTGTCGAGGC CGGCGCCCGC 
ATCATGGAGC TGCGGCTCGA TGGGGCGTCG TCGTTCGAGC CCGGCGATCA GATCGGGATC 
GAGGGGATCG AGCCGGGGAT GCGTCTCGAC GTCGTCGGCG TGTCGAAGGG CCACGGGTTC 
TCCGGCGGTA TGAAGCGCCA CAACTTCCGT GGGCAGGGAG CGGCCCACGG TAACCACAAG 
AAGCATCGTG CTCCGGGCTC GATCGGGGCG TGCGCCACGC CCGCACGCGT GTTCAAGGGG 
ACGCGTATGG CGGGTCAGTA CGGTACCGAG CGGGTCACCA TCCATAACCT CGAGGTCGTG 
CGGGCTGAGC CCGAGCGCCA GCTCGTGCTG GTGAAGGGCT CGATCCCTGG TCCGCGGGGC 
GCCATCGTCG TGGTTCGTGA TTCGGTGAAG GGGCGGAAGT AG
 
Protein sequence
MARKTFVGEK VGMTQVWTEG DRAVPVTVIK VVPTWVVRTK TPERDGYEAV QVAVGRVKPQ 
RLSRPVAGQF EARGVEAGAR IMELRLDGAS SFEPGDQIGI EGIEPGMRLD VVGVSKGHGF 
SGGMKRHNFR GQGAAHGNHK KHRAPGSIGA CATPARVFKG TRMAGQYGTE RVTIHNLEVV 
RAEPERQLVL VKGSIPGPRG AIVVVRDSVK GRK