| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Afer_0391 |
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| Symbol | |
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| ID | 8322450 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidimicrobium ferrooxidans DSM 10331 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013124 |
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| Strand | + |
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| Start bp | 399848 |
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| End bp | 403393 |
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| Gene Length | 3546 bp |
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| Protein Length | 1181 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644951543 |
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| Product | DNA-directed RNA polymerase, beta subunit |
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| Protein accession | YP_003109032 |
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| Protein GI | 256371208 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGATCACGA GGCACCGTCC GCCTGAGCGC TTCAGCTTCG CGTCCGCGCG CAATGTTCTG
CCGCTGCCCG ATCTGATCGC TGTGCAGCGC GACTCGTTCC GCTGGTTCTT GAATGAGGGG
CTCGCGGAGG CCTTTCGAGA CATCTCCCCG ATCGAGGACT ACTCCGGCCA GCTCGCACTC
GAACTCGAGT ACGACCCCAG CGATCCTGAT CTCGCGCCGG TCCCGAAGTT CTCGGCGGAG
GAGTGTCGCG AGAAGGACAT GACCTATGCC GGCCCGATCT TCGTGCGGGC TCGGTTCTTG
AACCGCCAGA CCTACGAGAT CAAGCAGCAG ATCGTGTTCA TGGGCGACTT CCCGCTCATG
ACCGACCGAG GTACGTTCAT CATCAACGGG ACCGAGCGTG TCGTGGTGAG CCAGCTCGTC
CGCTCGCCCG GCGTCTTGTT CCAGCCCGGT CGCGATCAGC ACACCGTCGT GACGGCCACC
ATCAACCCCT ACCGAGGGGA GTGGCTCGAG TTCGACGTCG AGGCCCGGCC GGGTCGCGAT
ATCAATGCGG GGGGCCGCGT CGCGCGTAAG CGCCGGCTGA GCCTGTTCAC GGTCCTGCGG
GCGGCTGGGC TTGACGACCC TGCCGATCTT GAGCGCCTGG TCGCACACTT CGACTTCCTC
GAACCTCAGT GGGCCAAGGA GGACCACTCC CAGACCCGCG ACGACGCCCT GATGGAGGTG
TTCCGTCGGG TACGCCCGGG CGAGCCGATC AACGTCGAGG CGGCCCGCCT CTACTTCGAG
ACCGCGTTCT TCCAGAGCCG GCGCTATGAC CTCACCCGCG TGGGTCGCTA CAAGATCGAC
AAGCGACTCA GCGCGGAGAT CGAGCGCGTC GAGGAGATCC TCGGTCACCC GCTGGATCGA
ACCTCGGAGT CGCCGCTCGT GCTCAGCCGT GCGGACATCA TCGCGACCGC GAGCTACATG
CTGCACCTGG TCGCTGGCGA GCCCGGGTAT CGCTTCGACG ATCAGGACCA CTTCTCCAAC
CGGCGGGTCC GCAGCGTCGG CGAGCTGATC CAGAACCAGC TCAAGATCGG GCTCTCCCGC
CTCGAGCGCC TCGTCCGTGA GCGCATGACG ACCCAGGACG TCGAGGCGAT CACGCCGCAG
AGCCTCATCA ACATCCGTCC GGTGGTCGCT GCGATCAAGG AATTCTTCTC CACCAGCCAG
CTGAGCCAGT TCATGGACCA GAACAACCCG CTCTCTGGCC TTGCCCACAA GCGCCGCCTG
TCGGCACTTG GTCCAGGTGG TCTGTCGAGG GAGCGAGCGG GTTTCGAAGT ACGCGACGTC
CACTCGTCGC ACTACGGACG CATGTGCCCG ATCGAGACAC CGGAGGGGCC GAACATCGGT
CTCATCGGGG CGCTCGCGAG CTATGCCCGC CTGAATCGAT ACGGGTTCAT CGAGACCCCA
TATCGGCGTG TGGTGGACGG CAAGGTCACC GATGAGGTGG TCTACCTGAC CGCCGACGAG
GAAGAAGACT ACGTCATCGC GCAGGCGAAC GCGAAGCTCG ACGCCGAGGG TCGCTTCGTC
GAGCCGAAGG TCCTGGTGAG GCGCGGCCCG CAGGGCGCGG TCGTGCGGGT CGGTGCCATG
GCGGTCTCCT ACGGCGCCAC CAGTGAGGTC GAGCTCGCCA CCCCGGACGA GGTGGACCTC
ATGGACGTGA GTCCGGCGCA GGTGGTCTCG GTGTCGACGT CGCTCATCCC GTTCGTGGAG
CACGACGACG CCAATCGTGC GCTCATGGGT GCCAACATGC AGAAGCAGGC GGTGCCGCTG
CTCGTCCCTG AAGCGCCCTT CGTCGGTACC GGTGTGGAAG CCCGAGCCGG ACTGGACGCT
GGCGACGTTC TTGTCGCCGA GGGCCCAGGT GTCGTGTCAG AGGTGACCGG CGCCTCGATC
GCGGTGACCT ACGACGATTC CGTGACCGAC GATGCCGGTC GGCCACTCGG AACACGTCGC
TACTGGCTGA CGAAGTTCCA GCGATCCAAC CAGAACACCT GCTGGAACCA GCGTCCGACG
GTGGCCACCG GGGACCGGGT CGAGCTCGGT GACGTGCTCG CCGACGGTCC CGCCACCATG
CACGGTGAGC TCGCGCTGGG GAAGAACCTC CTCGTGGCCT TCATGCCGTG GGAGGGCTAC
AACTTCGAGG ACGCCATCAT CATCTCGGAG CGCCTCGTGC GAGACGACGT GCTGTCCTCG
CTGCACATCG AGGAGTTCGA GACCGATGCG CGCGACACCA AGCTCGGTGC CGAGGAGATC
ACCCGCGACA TCCCGAACCT GTCGGAGGAG GCCCTCGCCG ATCTCGACGA GCGCGGCATC
GTCCGTATCG GAGCCGAGGT CGGCCCCGGT GACATCCTCG TCGGCAAGGT GACGCCGAAG
GGCGAGACCG AGCTCACGCC GGAGGAGCGA CTGCTGCGTG CGATCTTCGG CGAGAAGTCC
CGCGAGGTCC GCGACACCTC GCTGCGCGTG CCCCACGGTG AGTACGGCAA GGTGATCGAC
GTCAAGGTGT TTACCCGCGA GGACGCGACC GAGCTGCCGC CCGGCGTGAA CGAGCTGGTT
CGGGTGTACG TTGCGCAGCA CCGCAAGATT CAGGTCGGTG ACAAGCTCGC CGGTCGGCAC
GGGAACAAGG GTGTGATCTC GCGGATCCTC CCCATCGAGG ACATGCCTCG ACTGGAGGAC
GGTACGCCGG TCGACATCAT CTTGAACCCG CTCGGCGTTC CGAGCCGCAT GAACATCGGC
CAGGTGCTCG AGGCGCACCT CGGCTATGCC GCCCGGTGGG GGTGGGAGCC CATCGGCGAG
GGCGCACGGG AGCATCGCAA GACGCGTCCG GTGACGGTCC CGGCCCGGTG GGTGGCGAGT
CCCGCCTTCG ACGGCGCGCA CTGGGACGAG TCGGAAGAGG CCGGGGACCT GCCGACCATC
AAGGAACTGC TCGAGCGGCT GAACCCGCAG AGCCGCGACG GCGAGCGCCT CGTCCAGCCC
GACGGCAAGG CGGTGCTCTA CAACGGGCGC ACCGGCGAGC GCTACGACAA CCCCGTCATG
GTGGGCTACG TCTACATGCT CAAGCTGGCG CACATGGTCG ATGACAAGAT CCATGCTCGC
TCGACGGGCC CGTACTCGAT GATCACGCAG CAGCCCCTCG GCGGCAAGGC CCAGTTCGGT
GGGCAGCGCT TCGGTGAGAT GGAGGTGTGG GCCCTCGAGG CCTACGGCGC CGCGTACGCG
CTGCAGGAGC TGTTGACCAT CAAGTCCGAC GACGTCGTAG GCCGTGTGAA GGTCTACGAG
GCCATCGTCA AGGGTGACAA CATCCCAGAA CCGGGGATTC CGGAGAGCTT CAAGGTGCTC
ATCAAGGAGA TGCAGTCGCT GTGTCTGAAC GTGGAGGTGC TCGCTCCGAA CGGAGAGCGG
GTGCAGCTGC GCGAGTTCGA GGATGAGGCG TACTCGGCGG CGGAGGAGCT CGGTATCAAC
CTGAGCCGCC CTGAGCGCAA CACGGACTAC GGCGACGACG AGCGACGCGA GGAGAGGGGT
CAGTAG
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| Protein sequence | MITRHRPPER FSFASARNVL PLPDLIAVQR DSFRWFLNEG LAEAFRDISP IEDYSGQLAL
ELEYDPSDPD LAPVPKFSAE ECREKDMTYA GPIFVRARFL NRQTYEIKQQ IVFMGDFPLM
TDRGTFIING TERVVVSQLV RSPGVLFQPG RDQHTVVTAT INPYRGEWLE FDVEARPGRD
INAGGRVARK RRLSLFTVLR AAGLDDPADL ERLVAHFDFL EPQWAKEDHS QTRDDALMEV
FRRVRPGEPI NVEAARLYFE TAFFQSRRYD LTRVGRYKID KRLSAEIERV EEILGHPLDR
TSESPLVLSR ADIIATASYM LHLVAGEPGY RFDDQDHFSN RRVRSVGELI QNQLKIGLSR
LERLVRERMT TQDVEAITPQ SLINIRPVVA AIKEFFSTSQ LSQFMDQNNP LSGLAHKRRL
SALGPGGLSR ERAGFEVRDV HSSHYGRMCP IETPEGPNIG LIGALASYAR LNRYGFIETP
YRRVVDGKVT DEVVYLTADE EEDYVIAQAN AKLDAEGRFV EPKVLVRRGP QGAVVRVGAM
AVSYGATSEV ELATPDEVDL MDVSPAQVVS VSTSLIPFVE HDDANRALMG ANMQKQAVPL
LVPEAPFVGT GVEARAGLDA GDVLVAEGPG VVSEVTGASI AVTYDDSVTD DAGRPLGTRR
YWLTKFQRSN QNTCWNQRPT VATGDRVELG DVLADGPATM HGELALGKNL LVAFMPWEGY
NFEDAIIISE RLVRDDVLSS LHIEEFETDA RDTKLGAEEI TRDIPNLSEE ALADLDERGI
VRIGAEVGPG DILVGKVTPK GETELTPEER LLRAIFGEKS REVRDTSLRV PHGEYGKVID
VKVFTREDAT ELPPGVNELV RVYVAQHRKI QVGDKLAGRH GNKGVISRIL PIEDMPRLED
GTPVDIILNP LGVPSRMNIG QVLEAHLGYA ARWGWEPIGE GAREHRKTRP VTVPARWVAS
PAFDGAHWDE SEEAGDLPTI KELLERLNPQ SRDGERLVQP DGKAVLYNGR TGERYDNPVM
VGYVYMLKLA HMVDDKIHAR STGPYSMITQ QPLGGKAQFG GQRFGEMEVW ALEAYGAAYA
LQELLTIKSD DVVGRVKVYE AIVKGDNIPE PGIPESFKVL IKEMQSLCLN VEVLAPNGER
VQLREFEDEA YSAAEELGIN LSRPERNTDY GDDERREERG Q
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