Gene Afer_0270 details

Gene Information

• Locus tag: Afer_0270
• ID: 8322324
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Acidimicrobium ferrooxidans DSM 10331
• Kingdom: Bacteria
• Replicon accession: NC_013124
• Strand: -
• Start bp: 273928
• End bp: 275808
• Gene Length: 1881 bp
• Protein Length: 626 aa
• Translation table: 11
• GC content: 68%
• IMG OID: 644951418
• Product: ABC transporter related
• Protein accession: YP_003108912
• Protein GI: 256371088
• COG category: [V] Defense mechanisms
• COG ID: [COG1132] ABC-type multidrug transport system, ATPase and permease components

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGCAGCCTG GAGGGGGCTT CGGCGGAATG CGCGCGCTGC GAGGCATGGC CGCCGATCCG 
GTGCGGCCAG GCTCGATCGA TCGCCGCACG CTTCGGCGGG CCTGGAGCGT CACGAAGCGC 
CATCGGGCCC TCATCATCGT CTACCTGGCC ACGCTCGCCA TCTCCGCACT CCTCGGCGCA 
CTGGTGCCGC TCGTGGTGCG AGACATCATC AACGTCGCCA TCGTTCGGCG CTCGATCGGG 
CGCCTCACGA TCGACGTCGT CATCATCGCC GCGCTGTCGC TCGCTCAGAG CGCGCTCGGC 
GTGGGAACGC GCTACGTCTC CTCGGTCGCT GGCGAGCGGA TCATCTTCGA CCTGCGCACC 
CGTCTCGTCG CCCACCTCCA GGAGCTGTCG CTCGGCTTCT TCACCGAGGC ACAGACGGGC 
TCGGTGCTCT CGCGCATCTC CTCGGACGTC ACCAGCTCAC AAGCCGTCGT CGGGACCCTC 
GGCTCGGTGG TGAGCGATCT TTCGACCCTG ATCTTCACGC TCGGCTTCAT GGTCGCGCTC 
TCACCGCTCG TCACCGCCCT CTCGTTGCTC ATCGTGCCGG TCTTCGTCCT CGTCGACCGC 
CTCTTGTCGC GTCGTGTCGC ACACGCTGCG CGCGAACAGA TGCAAGCCAA TGCCGAGATG 
AACGCCTTCA CCCAGGAGCG CTTCAACGTC TCCGGCGCGC TGCTCGTTGC GCTCTTCGGC 
CGCCGAGGCG ACGAGCTCGA CACCTTCTCC CATCATGCGG GTCGCGTCCG TGACGCGGGT 
GTGCGCTTCG CCCTGGTCGG CAGGGTCTAC TTCGCTATTC TCGGGCTTGC GAGCGCGATC 
GGGACCATCG CGGTCTATGC CCTCGGAGGT GACCAGGTGA TCCGCGGCGC ACTCTCCCTG 
GGATCGCTCG TCGCGCTCGC GCAGTACGTC ACCCGCCTCA CCGGGCCCAT CACCGACCTC 
TCCTCGGCTC GGGTCAACCT TCTCCAGGCA CTCGTGAGCT TCGACCGCAT CTTCGAGGTC 
CTCGACGTCC AACCCGCCGT GACCTCGCCC CCGAACCCAC GTCACCTGCA GCGCGTCGAG 
GGTAGGGTCG CCCTCGAGGA CGTGTGGTTT CGCTATCCTC GGAACCAGGC GGTCGCGAGC 
CTCACCAAGC AGGGTGTCCC GCGGAGCGAG GAGCGTGATT GGGCGCTTGC CGGGGTGACG 
CTCCACGTCG AGCCCGGCCA TACCCTCGCG CTCGTCGGCC CATCAGGGGC TGGCAAAACC 
ACGGTGACCA TGCTGGTGAC GCGGATGTGG GATCCAGAGC GCGGTCGCGT CACGCTCGAC 
GGCATCGACC TGCGCGAGCT CGACCTCGAG GAGCTCCGGG CCGAGATCGG CGTCGTCACC 
CAAGATCCGT TCCTCTTCCA CGACACCGTG CGCGCGAACC TTCGCTACGC CAAGCCATCC 
GCGACCGAGG ACGAGCTGCG CGATGCGCTC GCGCGCGCCC AGCTCCTCGC GACCATCGAG 
GCCCTCCCTG ATCGCCTCGA CACCCTCGTC GGCGAGCGCG GCTACCGACT CTCGGGCGGC 
GAGAAGCAAC GGCTCGCCAT CGCGCGCGTC CTGCTGCGCA ACCCGCGCAT CGTCATCCTC 
GACGAGGCGA CCTCGAGCCT GGACGCTCAG AACGAAGCAC TCATCCAGTC AGCGATCGGC 
GACACCCTCC AGGGACGGAC CGCCATCGTG ATCGCCCACC GCCTCTCCAC CGTCCTCGGT 
GCCGACACCA TCGCCGTCAT GGCCGCCGGC AGTGTCGTCG AGCAAGGGAG CCACGCCGAG 
CTTCTCGCCG CAGGTGGGCT CTACGCCGAG CTCTTCGAGC GTCAGTTCCT CACCGAGCAA 
GGGGAGGCAA CGGCGCCGTG A 

 

Protein sequence

MQPGGGFGGM RALRGMAADP VRPGSIDRRT LRRAWSVTKR HRALIIVYLA TLAISALLGA 
LVPLVVRDII NVAIVRRSIG RLTIDVVIIA ALSLAQSALG VGTRYVSSVA GERIIFDLRT 
RLVAHLQELS LGFFTEAQTG SVLSRISSDV TSSQAVVGTL GSVVSDLSTL IFTLGFMVAL 
SPLVTALSLL IVPVFVLVDR LLSRRVAHAA REQMQANAEM NAFTQERFNV SGALLVALFG 
RRGDELDTFS HHAGRVRDAG VRFALVGRVY FAILGLASAI GTIAVYALGG DQVIRGALSL 
GSLVALAQYV TRLTGPITDL SSARVNLLQA LVSFDRIFEV LDVQPAVTSP PNPRHLQRVE 
GRVALEDVWF RYPRNQAVAS LTKQGVPRSE ERDWALAGVT LHVEPGHTLA LVGPSGAGKT 
TVTMLVTRMW DPERGRVTLD GIDLRELDLE ELRAEIGVVT QDPFLFHDTV RANLRYAKPS 
ATEDELRDAL ARAQLLATIE ALPDRLDTLV GERGYRLSGG EKQRLAIARV LLRNPRIVIL 
DEATSSLDAQ NEALIQSAIG DTLQGRTAIV IAHRLSTVLG ADTIAVMAAG SVVEQGSHAE 
LLAAGGLYAE LFERQFLTEQ GEATAP