| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Afer_0250 |
|---|
| Symbol | |
|---|
| ID | 8322304 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidimicrobium ferrooxidans DSM 10331 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013124 |
|---|
| Strand | + |
|---|
| Start bp | 255015 |
|---|
| End bp | 255890 |
|---|
| Gene Length | 876 bp |
|---|
| Protein Length | 291 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 644951398 |
|---|
| Product | porphobilinogen deaminase |
|---|
| Protein accession | YP_003108892 |
|---|
| Protein GI | 256371068 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0181] Porphobilinogen deaminase |
|---|
| TIGRFAM ID | [TIGR00212] porphobilinogen deaminase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTCCGG TACGCATCGC CACTCGTCGT AGCGCCTTGG CGCGCTGGCA GGCGAGCTTG
GTCGGCGAGC GGCTCGGTCG CTACGAGCTC GTCGAGGTCC ACACCGCAGG TGATCGCGAC
CAGGCGAGCT CGCTTGCCGA GATCGGTGGC CAGGGCGTCT TCGTCAAGGA AGTGCAGGCC
GCGGTCGTGC GTGGCGAGGC CGACATCGCG GTCCACAGTG CCAAGGATCT GCCCACAGCC
GCAGGCCCGC TCCTGCTCGC GGCGGTGCTC GAGCGCGCGG ACGCCCGCGA CGCGATCGTG
GGCGCGCGGC TGGAGGAGCT CGCGATCGGC GCTCGGGTCG GCACATCGGC CCCGCGTCGA
GCTGCGCAGC TGCGCCTCCT CCGCCCTGAC CTCGAGGTGG TATCGATCCG CGGCAACATC
GCGACCCGTC TCGGTCGCGT TGGGGAGCTC GATGCGATCG TGATGGCTGT CGCCGCGCTG
GAGCGCCTCG GCCTCGAGGA GCCGCCTTGG TGGCCGCTCC CCGAGGAGGT CCTCTGTCCA
CAGGCCGGTC AGGGGGCCAT TGCGGTGGAG TGTGCCCCCG ACGCCGATGG GCTGATCGAG
CGCCTTCGGT CCCTCGACGA CGATCGGAGC CGCCGCGAGA TCGAGGCGGA GCGGGCCGTC
CTCGCCGCGT TCGGTACCGG CTGCGCGCTC CCGCTCGGTG CGCGGGCCCA TGCCGATGGG
TCGAGTCTGC GGCTCCGGGC GGTCGCGGTT GATCCCGATG GCACGCGCCA GCTGGAGGTC
GAGCGCGAGG GAGTCGATCC CGCGACGCTC GGTGCAACGG TCGCCGAGGT GCTGCGGCGC
CTGGGCGCCG ACGCACTCGT CGGAGCTCGT CCCTGA
|
|---|
| Protein sequence | MAPVRIATRR SALARWQASL VGERLGRYEL VEVHTAGDRD QASSLAEIGG QGVFVKEVQA
AVVRGEADIA VHSAKDLPTA AGPLLLAAVL ERADARDAIV GARLEELAIG ARVGTSAPRR
AAQLRLLRPD LEVVSIRGNI ATRLGRVGEL DAIVMAVAAL ERLGLEEPPW WPLPEEVLCP
QAGQGAIAVE CAPDADGLIE RLRSLDDDRS RREIEAERAV LAAFGTGCAL PLGARAHADG
SSLRLRAVAV DPDGTRQLEV EREGVDPATL GATVAEVLRR LGADALVGAR P
|
|---|
| |