Gene Afer_0225 details

Gene Information

• Locus tag: Afer_0225
• ID: 8322278
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Acidimicrobium ferrooxidans DSM 10331
• Kingdom: Bacteria
• Replicon accession: NC_013124
• Strand: +
• Start bp: 229554
• End bp: 230066
• Gene Length: 513 bp
• Protein Length: 170 aa
• Translation table: 11
• GC content: 68%
• IMG OID: 644951372
• Product: Shikimate kinase
• Protein accession: YP_003108867
• Protein GI: 256371043
• COG category: [E] Amino acid transport and metabolism
• COG ID: [COG0703] Shikimate kinase

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 0.737302
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGAGTGATG CGTCCGAGCG TGTCGTGCTC ATCGGCTTCA TGGGGGCGGG CAAGACCACG 
GTGGGTCGCT TGCTCGCTCG TCGCCTCGGT GCAGACTTCG TCGACGCCGA TGACGCGCTC 
GTTGCCGAGA CCGGGCGGTC GATCCCGGAT CTGTTTCGAG TGCGTGGCGA GGTCGGGTTT 
CGCCAGCTCG AGGGGGATCT CCTGGGTCGC CTGCTCAGGT CGGCGCGTGG CGTCATCGCG 
CTCGGGGGTG GGGCGATCGA GCACGACGAG CTCGCGGAGC TCGTTGCTCC GTGGCTCGTG 
ATCTATCTCG AGGTCCCCTA CGACGTTGCC CGTCAGCGAG TTGGATCGGA CGACGGGCGG 
CCGATGCTGA CCAGGTCCGA TCTCGAGTCG GTCTACCGAC GGCGCGTCGC TCGATACCGG 
CGACTCGCTG ACCTCACCGT CGACGCCACC GACGCACCGT CCGTCATCGT CGACGAGATC 
GTCAGCGCGT TTGGTGCGCT GGGCGACGGC TGA 

 

Protein sequence

MSDASERVVL IGFMGAGKTT VGRLLARRLG ADFVDADDAL VAETGRSIPD LFRVRGEVGF 
RQLEGDLLGR LLRSARGVIA LGGGAIEHDE LAELVAPWLV IYLEVPYDVA RQRVGSDDGR 
PMLTRSDLES VYRRRVARYR RLADLTVDAT DAPSVIVDEI VSAFGALGDG