| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Afer_0206 |
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| Symbol | |
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| ID | 8322259 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidimicrobium ferrooxidans DSM 10331 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013124 |
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| Strand | + |
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| Start bp | 210627 |
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| End bp | 211787 |
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| Gene Length | 1161 bp |
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| Protein Length | 386 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644951353 |
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| Product | putative type IV secretory pathway VirD4 protein |
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| Protein accession | YP_003108848 |
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| Protein GI | 256371024 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3505] Type IV secretory pathway, VirD4 components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.415512 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCCTCG GTGCACTGAT CGGAGGCCTC GCTGCCATCG CGACCCTGGC CGGTGTCGGC
AGGCCCCGTA CAAGAGAGCA TCGCAGTGGC CCGCGACCAC TGCCGCGCAC CGCGGGGATC
GGCATCGTCC GCAGCGACGA GATCGTGGTT CGACTCGGGC GCTGGCGCCG TGTCGGCGTG
GGGCGAGGAT CGTCGTTGCT CGTGGTCGGC CCGACCCAGA GCGGCAAGAC GCGCAGGGTC
GTGGCGGAGA ACCTGCGACG TCATCCGGGG ACCGTCCTCG TCACCTCCGT CAAGGGTGAC
GTCCTCGATG CGCGTGCGCT CGAGCGGCGT CACGACCTCG GGGACGTGTG GGTCCTCGGT
GATACGCCGC GAGCGACGCA CGAGTGGCAG CCCTGGTTCG AGGCCATCGA CGACACCCAT
GCACTCGCGA TGGCAGATCG ACTGCTGGCG ATGGTGCCCG AGCGCAGAAC CCCGAGCGCC
GAGGTTCGGT TCTGGCACGA GCTTGCACGT CCCTACGTGG CCGCGTGGCT GCGCCTTGCG
TGGTACGGAG AGCAGGTGCC GGTGGGTGAG TTGCTCGTCC GCGCAGCCGA GGTGGCGGGG
GACGAACTTC GTGCGGCCCT TGATGAGACG GTCGCCGATG GCCGTCAGCG TGACTCGCTG
CACGTGACCA TCCAGGCAGC GCTCGGCGCG GCCCGAGGAC CGAGGAGTCG TGGGTGGCCG
GTCCGACTCG GCGAGGCCCT CGCCCCGACG GTCGTGGTGG TGGGTTCGCT CGCCGAGCAG
GAGCGCCGCT CCGCCTGGTA TGCGACGCTC CTCGACACGG CCTTCGAGGC CATCTTGCGC
CAGCCGGCCA ACACGCTCGT CCTCCTCGAC GAGGTGGCCC ACCTCGCGCC GGTGCCTCGC
CTCGCGCACG TCGCTGCCGT CAGCGTGGGT CTGGGCGCAC GGCTGGTGAC GATCGCACAG
GACTTTGCCC AGTTGGAGGC GGCCTTCGGG GTCGAAGCAG CCTCATTGGT TGCCAACCAC
CGTGCCCGAC TGTTCCTCGA CCCCGCCCAC GATCCTGGGG TTCGAGCGCA CCTCGCGGCC
CTCGGGCTGC GAGGTGACGA GGGCGCCATC CTCCTCGGCC CTCGTGGTGC GCGGCGTCCG
ATCCTTGGGT CGGTGGCTTA G
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| Protein sequence | MSLGALIGGL AAIATLAGVG RPRTREHRSG PRPLPRTAGI GIVRSDEIVV RLGRWRRVGV
GRGSSLLVVG PTQSGKTRRV VAENLRRHPG TVLVTSVKGD VLDARALERR HDLGDVWVLG
DTPRATHEWQ PWFEAIDDTH ALAMADRLLA MVPERRTPSA EVRFWHELAR PYVAAWLRLA
WYGEQVPVGE LLVRAAEVAG DELRAALDET VADGRQRDSL HVTIQAALGA ARGPRSRGWP
VRLGEALAPT VVVVGSLAEQ ERRSAWYATL LDTAFEAILR QPANTLVLLD EVAHLAPVPR
LAHVAAVSVG LGARLVTIAQ DFAQLEAAFG VEAASLVANH RARLFLDPAH DPGVRAHLAA
LGLRGDEGAI LLGPRGARRP ILGSVA
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