| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Afer_0102 |
|---|
| Symbol | |
|---|
| ID | 8322155 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidimicrobium ferrooxidans DSM 10331 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013124 |
|---|
| Strand | + |
|---|
| Start bp | 109303 |
|---|
| End bp | 111210 |
|---|
| Gene Length | 1908 bp |
|---|
| Protein Length | 635 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 644951251 |
|---|
| Product | DNA polymerase III, subunits gamma and tau |
|---|
| Protein accession | YP_003108746 |
|---|
| Protein GI | 256370922 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG2812] DNA polymerase III, gamma/tau subunits |
|---|
| TIGRFAM ID | [TIGR00678] DNA polymerase III, delta' subunit
[TIGR02397] DNA polymerase III, subunit gamma and tau |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGCCGAGC CTTACCAGTC GCTGTATCGG CGCTTTCGAC CGCGGCGCTT CGGCGAGGTC
CGAGGTCAGG AGCGCGTCAC CGAGACCTTG AGGCGCGCGG TGGCCGAGGG GCATGTCTCG
CACGCCTACC TCTTCTCGGG CCCGCGGGGA ACCGGGAAGA CCTCGACTGC TCGTATCCTC
GCGATGGCGC TCAACTGCGA GGCGCCCGTC GATGGTGAGC CGTGTCTCGC CTGCGCGTCG
TGCGAGGCCG TCGTGCGCGG CAGCTCCGCG GACGTCGAGG AGCTCGATGC AGCGTCGAAC
TCCGGTGTGG ACTCCATTCG ATGGATCACC CAGACCGTTG CGGCTGCGCC GGTCGGGCGG
TGGCGCGTCT ACATCGTCGA CGAGGTCCAC ATGCTCTCGC AGGCAGCGTC GAACGCCTTG
TTGAAGACGC TCGAGGAACC GCCGGCGCAC GTCGTGTTCA TCCTCGCGAC GACCAACCCG
GCCAAGGTGC TCGCAACCGT GCGCTCGAGG ACGCAGCACT TCGCCTTTCG CCTGCTCGAC
GACGCATCGG TCGATGCGTT GGTCGCCGAG GTCCTGGAGG CGCTCGGCGC CAGCTTGTCC
GACGAGGCGC TGGCCTACGT GCGTCGGCGG GGCGGAGGAT CTGCGCGTGA CACGCTCTCG
GTTCTTGAGC AGGTCCTCGC GCTCGGAGGC GTGGTGAACG ACGCGGCCGA CGGCGCCGTC
GCGCTCGCAC AGGCGATCGC AGACGGTGAC CTCGCGTCCG CGGTGCGCAT CGCGAGCGAT
GCCTTCGAGG GCGGCATCGA CCCGACAGAA CTCGTCGCCG ACACCGTGGG CGATCTCGGT
CGACGGTTCG TGGCCGAGGC GCTGGCCGGT GCGCGAGGGG CGGAGCTCGC TCGGCTCTCG
CGGCCGCTCG AGACCCTCGG ACGCTTGGGG GCGGGCCTGC GCGATGCGTT GGACCCACAG
GTGGTCGTGC TCGCAGGGCT CGCCGAGGCG CTGGCGCCGG ACGCGAGGCT CAGCGCGCTC
GAGGCTCGCG TGGCCGCGCT CGAGGCCGAC CTCGCAGGAG CCGGTCACAT GCCGAGACCC
AAGCCACCGA CCGGCGAGCC ACTGCCGGCC CGGACCACGA GCCCCGAGCC CGCCGGGCAC
TCGGCGTCGC CAAACGTTGC GGAGCCTGAG ACCAGCCAGC CAGAGACCCG GGAGCGAGCG
TCCCGCGCAC CAGCGCGCGG ACTCCAAGAT GCTCGGCGTG GTGGCGACGA GCATCCTGGT
GCGTCCACCG AGCAGCGGCC CTCGTCGCTC GATCGCGTGC GTGCTGCCTT CGCGAGGAAT
CAGCAGCGGG CCGATGTCGA CCGTGGCGAG CCATCCGAGC CCGTCGCGAC CACCCCGGCC
CCTCATGGAG ACGATGACCA GCCCGCGGCG GCCCCCGACG CGCACGGCTC CCCGGTGCCG
AGCGGGCTCG CTGACGAAGC AACGCGAGCC GCTGGGCCCG CGTCGCTCGA GGCCCGTCGG
CAGCGACTGC AGGCACGCTG GTTCGACGAC GTGATGGCCA AGGCGCCCCG GGTCCTGCGT
CCGCTCCTCG CGCACGCTCG TCTCGCGATC CGAGACGAGC GCATCGTGGT GGCGGTCGAC
AACCGAACGG TTGCCGAGCG GCTCGTCCCC CATCTCGCCG AGATCGTCGC GCTCGTCGGC
CCGGACGAGT TTGCCGAGCC GCCCGAGATC GTCGTCGACC CTGGATCGAG TCAGACGTCG
TCCCGGGCGC CCGCTGCGAG CGTCGACGAT CGCGATCCAG GCGACGAGGA CGGCGTCGAT
CTCACCGACG CCCCCTCGTC CGATGCGACC CCCGTGCGCG ACCTCAGCGA GTCGGTGATC
GAGGCCAACG TCCGCAGCAT CTTCGAGGAT GCTCGACGGC TCCCATGA
|
|---|
| Protein sequence | MAEPYQSLYR RFRPRRFGEV RGQERVTETL RRAVAEGHVS HAYLFSGPRG TGKTSTARIL
AMALNCEAPV DGEPCLACAS CEAVVRGSSA DVEELDAASN SGVDSIRWIT QTVAAAPVGR
WRVYIVDEVH MLSQAASNAL LKTLEEPPAH VVFILATTNP AKVLATVRSR TQHFAFRLLD
DASVDALVAE VLEALGASLS DEALAYVRRR GGGSARDTLS VLEQVLALGG VVNDAADGAV
ALAQAIADGD LASAVRIASD AFEGGIDPTE LVADTVGDLG RRFVAEALAG ARGAELARLS
RPLETLGRLG AGLRDALDPQ VVVLAGLAEA LAPDARLSAL EARVAALEAD LAGAGHMPRP
KPPTGEPLPA RTTSPEPAGH SASPNVAEPE TSQPETRERA SRAPARGLQD ARRGGDEHPG
ASTEQRPSSL DRVRAAFARN QQRADVDRGE PSEPVATTPA PHGDDDQPAA APDAHGSPVP
SGLADEATRA AGPASLEARR QRLQARWFDD VMAKAPRVLR PLLAHARLAI RDERIVVAVD
NRTVAERLVP HLAEIVALVG PDEFAEPPEI VVDPGSSQTS SRAPAASVDD RDPGDEDGVD
LTDAPSSDAT PVRDLSESVI EANVRSIFED ARRLP
|
|---|
| |