| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Afer_0088 |
|---|
| Symbol | |
|---|
| ID | 8322136 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidimicrobium ferrooxidans DSM 10331 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013124 |
|---|
| Strand | - |
|---|
| Start bp | 91136 |
|---|
| End bp | 92698 |
|---|
| Gene Length | 1563 bp |
|---|
| Protein Length | 520 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 644951233 |
|---|
| Product | serine/threonine protein kinase with PASTA sensor(s) |
|---|
| Protein accession | YP_003108732 |
|---|
| Protein GI | 256370908 |
|---|
| COG category | [K] Transcription
[L] Replication, recombination and repair
[R] General function prediction only
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0515] Serine/threonine protein kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCGACG AGTCGACCGC CCCCCTCTCG CTCGGTCGCA GGGACCGAGG ACGCCGAACT
CGACGCGACG GCCAGCTCCA CGTCTTCGGG ACGCGCTACC AGCCCATCGC GAAGATCGCC
CGAGGGGGCA TGGCCGACGT CTACGAGGCG CGAGATCTCC TGCTCGACCG CCTCGTAGCG
CTCAAGGTGC TCTTCGCGGA GCTGTCGACG AACCCGACGT TCGTCGAGCG ATTCCGGCGT
GAGGCGCAGT CGGCAGCGGC GCTGTCGCAC CCGAACATCG TGTCGGTCTA CGACTGGGGC
CCCGCGAACG GCACCTACTT CATCGCGATG GAGCTCGTGA GCGGCCAGAC GCTGGCGCAG
CTCATCCGCA CGGTCGGGGT CGTCCCTCCC GAGCAGGCAG CCTCGATCGG CGCCGACGTC
GCGCTCGCAT TGGCCTTCGC CCATCGCCAC GGGGTCGTCC ACCGCGACAT CAAGCCCTCC
AACGTGCTCA TCACCGAGGA CGGCATCGTG AAGGTGGCCG ACTTCGGCAT CGCGCGCGCG
GTCGCCAACG ACGAGGACCT GACCCAGACC GGCTCGGTCC TCGGGACCGC GACCTACATC
TCGCCGGAGC AGGCCCGTGG CGAGGATCTC GATGGACGCA GCGACATCTA CTCCCTCGGG
ATCGTCCTCT ACGAGATGCT CACCGGGACG CCACCCTTCC TCGGTGAGAC ACCGATCGCC
GTCGCCTACA AGCACGTCAC CGAGGCGCCG ACCCCGCTCC GGAACGTGAA CCCTCGGGTG
AGTGCCGAGC TCGAGACCGT GGTCATGCGC TGCCTCGCCA AGCAGCGCGA CCAGCGCTAC
CCCGACGCGA CGGCACTGCG TGTCGATCTG CAGCGGGTGC TCGAGCACCG TCCCCTGCGC
ACGACGACCA CCCAGACCGC GCTCGGCGAG CGCACGATGG CGATCGGAGC GGTCGAGGGC
GTTGGCGATC GGACGCAGTT GCTGAGCTCG CCAGCCTCCA CAACGCCGCC CCGACGGTCG
CGCCGATGGC CGTGGCTCGC GATCGTGCTG GTCGTGGTGC TCGGGCTCGG CGTCGCGATC
GGAGTGATCG CAAGCCGCCT CACGGCCGTC GCGGTCGTCG CGGTCCCGCG CCTTCGTGGG
ATGTCAGAGG CAGCAGCCTC CAACGACCTC GGTGCCGACC AACTCGTCCT CGGGACCGTG
ACGACCGAGG CCAGCACCAC CGTGCCACCC GGCGAGGTCA TCGCGACCAG CCCCACCGCC
GACACCACCG TTGCGATACG ATCTCGCGTC AACCTCATCG TCTCTTCCGG ACCACCTCGC
GTGGTCGTAC CGACCCTCCA AGGCCTCTCC GTCGCGGCCG CCTCGAACCT CCTCGGAACC
CACCAACTCG TCCTCGGGAC GGTGTCCTAC CAAACGAGCA CCACCGTGCC GAGCGGTGAC
GTGCTCGCAT CGCGCCCGGC CGCGGGCACC GAGGTCGCCC CTGGATCAGC TGTGACATTG
GTGATCGCGC GAGCGCCAGC ACCAACCGCC ACGGCGCACG CTAAGCGGAA GAGGTCGTCA
TGA
|
|---|
| Protein sequence | MTDESTAPLS LGRRDRGRRT RRDGQLHVFG TRYQPIAKIA RGGMADVYEA RDLLLDRLVA
LKVLFAELST NPTFVERFRR EAQSAAALSH PNIVSVYDWG PANGTYFIAM ELVSGQTLAQ
LIRTVGVVPP EQAASIGADV ALALAFAHRH GVVHRDIKPS NVLITEDGIV KVADFGIARA
VANDEDLTQT GSVLGTATYI SPEQARGEDL DGRSDIYSLG IVLYEMLTGT PPFLGETPIA
VAYKHVTEAP TPLRNVNPRV SAELETVVMR CLAKQRDQRY PDATALRVDL QRVLEHRPLR
TTTTQTALGE RTMAIGAVEG VGDRTQLLSS PASTTPPRRS RRWPWLAIVL VVVLGLGVAI
GVIASRLTAV AVVAVPRLRG MSEAAASNDL GADQLVLGTV TTEASTTVPP GEVIATSPTA
DTTVAIRSRV NLIVSSGPPR VVVPTLQGLS VAAASNLLGT HQLVLGTVSY QTSTTVPSGD
VLASRPAAGT EVAPGSAVTL VIARAPAPTA TAHAKRKRSS
|
|---|
| |