| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Afer_0027 |
|---|
| Symbol | |
|---|
| ID | 8322073 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidimicrobium ferrooxidans DSM 10331 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013124 |
|---|
| Strand | + |
|---|
| Start bp | 28705 |
|---|
| End bp | 30312 |
|---|
| Gene Length | 1608 bp |
|---|
| Protein Length | 535 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 644951174 |
|---|
| Product | integral membrane protein MviN |
|---|
| Protein accession | YP_003108675 |
|---|
| Protein GI | 256370851 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0728] Uncharacterized membrane protein, putative virulence factor |
|---|
| TIGRFAM ID | [TIGR01695] integral membrane protein MviN |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGTGCAGG CGCGTCTCGT GCGGCTGCTG GCCGGTCGCG GTCGTTCGGT GGGCGAGAAC
GCCACCGCCA TGGCGATCGG GACGGCGGCA AGTCGTCTCA GCGGGTTCGT GCGCCTGATC
GTCCTCGCGG TGGTGCTCGG GGTGCGTCCG TTGGCCGACG CCTTCAACCT GGCGAACAAC
ACGCCGAACA TGCTCTACGA CCTGTTGCTC GGTGGAGTGA TCAGCTCGAC GATCCTTCCC
GTCGTGGCGG CTCGGATCGC GAGGGCGGGG GAGCGAGCCG GCGAGCGCTC GCTCGCTGCG
ATCATGACGA TCGGGGTGGT GGGCCTCCTC GTGGCCACGG TGCTCTTCGA GGTCCTCGCC
CCGGCCGTCG TCGATCTCTA CCTCATCGGC GACCATCTTG CGGCTGCGGG CACGGAGCGC
GCGGTCGCGA TCGAGCTGTT GCGCTTGTTT GCACCGCAGC TCTTCTTCTA CGGCACGATC
TCCCTCGCCA CCGCGGCGCT CAACCTGCGG GGCAACTTTG CCGCCCCCGC CTTTGCGCCG
ATCGCGAACA ACGTCGTGGC GATCGCGGTG CTCGTCGCGT TCAGGGTCGC TGACGGCTCT
GCCACCCTCG ACGAGGTCGC CTCCCGTCCG GACGCGGTGC TGCTGCTCGG GCTCGGAACG
ACGCTCGGGG TGGCGGCCCA GCTCGGCGTG CTCATGCCGG TGATGGCGAG GCTCGGTCTC
GGACTGCGTC CACGTCTGCG CGTCAGCGAC CCCGCGGTTC GCGAGGTCGT CTCGCTGTCC
GGCTGGACGG CGGGCTACGT CGTCGCCAAC CAGGTCGCTC TCTTCGTGGT GCTCGCCCTT
GCCGCGACGC GGGCCGGCTA CGTGTCGGCC TACAACTACG CCTACCTGTT CTTCCAGCTC
CCGTATGCGG TGGTGTCGCT GAGCGTGATG AGTGCGCTCC AGCCCAGGCT CGCACGCTCG
TGGGCAGCTG GCGATCGAGC GAGATTCCGG CGTGATCTCG CCAAGGCGCT CGCCGTCGGC
GTCGGTGCCA CCATCCCTCT CGCGGTGCTC GCGTGGGTGG GGGGACCTGC CGGCCTCGAT
CTCCTCGTCG GCTATGGGGC GGTCAACGAG CACGGCGTCG CCCTCATCGC GGGTGCGCTC
CGCGGCATGG CGGTCGGGTT GCCCGGTTTC TCGCTCTTTC TGATGCTGAT CCAGGCGCTC
CAGGCCATGC GCAATGCTCG AGCTGCGTTC GTCGCCTACC TGGTCGAGAA CGGATTGAAC
ATCGTCCTCG CCGTCGTCGC GCTCGGTCCG CTGGGGGTCG AGGGCCTCGG GCTCGCGCTG
GGACTCGCCT ACACCATCGG CGCCATCGTC GCGATCGTCA TCGTTCGCTC GCTGCGGGGA
CTCGGCCCCA TCGCGCCGCT CCTCGGCTCG TGGGTGCAGC TCGCCGTCGC AAGTGTCGTC
GGTGGCGCCG TGCTGGCCGC GCTCCTCCCT AGCACGCTCG TCGCGCCGAA CCTTGGTTTT
GCCCTGCGTG TCCTCGGCGG GTTGGTCGCG GGGGTGGTAG TCTTCGGCGC TGCGGTGATC
GGCCTCCGCA CAATCCGAGT GGCCGTGGCG AGGGGAGTCG GACGGTGA
|
|---|
| Protein sequence | MVQARLVRLL AGRGRSVGEN ATAMAIGTAA SRLSGFVRLI VLAVVLGVRP LADAFNLANN
TPNMLYDLLL GGVISSTILP VVAARIARAG ERAGERSLAA IMTIGVVGLL VATVLFEVLA
PAVVDLYLIG DHLAAAGTER AVAIELLRLF APQLFFYGTI SLATAALNLR GNFAAPAFAP
IANNVVAIAV LVAFRVADGS ATLDEVASRP DAVLLLGLGT TLGVAAQLGV LMPVMARLGL
GLRPRLRVSD PAVREVVSLS GWTAGYVVAN QVALFVVLAL AATRAGYVSA YNYAYLFFQL
PYAVVSLSVM SALQPRLARS WAAGDRARFR RDLAKALAVG VGATIPLAVL AWVGGPAGLD
LLVGYGAVNE HGVALIAGAL RGMAVGLPGF SLFLMLIQAL QAMRNARAAF VAYLVENGLN
IVLAVVALGP LGVEGLGLAL GLAYTIGAIV AIVIVRSLRG LGPIAPLLGS WVQLAVASVV
GGAVLAALLP STLVAPNLGF ALRVLGGLVA GVVVFGAAVI GLRTIRVAVA RGVGR
|
|---|
| |