| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Afer_0008 |
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| Symbol | |
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| ID | 8322054 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidimicrobium ferrooxidans DSM 10331 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013124 |
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| Strand | + |
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| Start bp | 9712 |
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| End bp | 11214 |
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| Gene Length | 1503 bp |
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| Protein Length | 500 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644951155 |
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| Product | type II secretion system protein E |
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| Protein accession | YP_003108656 |
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| Protein GI | 256370832 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.105652 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGGCCACCA TCGCACCCGG GGTCGGACGA ACCGAGAGCC TTGCGCCTCG ATCGCTCGCC
GAGCTGATCG AGCGCGGCCC GTTCGAGCGC TACCTGCGCG AGACGCTCAC CTGGTCGCTC
GTGTCACGCT TCCTCGTCGA TGCGCAGCGC CACGCTGACG ACGAGCGTCA GGCCGCAGAG
TTCGACCATT GGCACGAGCG TTATCGGGCT CTCTTCTCTC GGGCCGCCGA CGAGGTTCTC
CAGACGGTGA GCCAGGAGAT GCTCGACCAC CTGAGTGTGC TCGAGAAGCG GGCGGCCTTC
AACGCCAACT ACGTCGCCAT CGGCGAGCGC ATCCGGACGC TGCTGCAAGC GCGTCCGGAT
GCCGACGAGA TCCAGCGGCT GCCGAACGTC GGACCGCTGC TCACCATCCG TCTCTACGGG
GAGATGTTCG ATCTCGGGAT CGTGTTGCTG TACTACTTCG CGTCCGAGGT GGAGAACATC
CACATCGTCG ACGAGCGCGT CACCGTCTAC ACGAGTGATG GTCGAGCGTG GCTCTCGATG
ATCGATGCGG CCGCCGACGG GCGCGCCCTC AAGGACCGTG GTGCGCAGTT CGCACAGATC
TCCGGGGGAG GCGTACCTCA ACGGTTCGAC CCCGTGCACC ACGCCCCGAA CCTGACGAGC
CCCTACGGGA TCCGCATGGC GCTCCGCCAG CGCACCACTC GATCGGGGGA GTTTCTCGCT
GCGTTGCGCC TGCACCATGC GACCAATATC ACCTTCGATG CCCTCATCGA ACAGGGGGTC
CTCAGCGAAG AAGCGGGCCT CATGCTCGCG CAGGCGGTAC GAGCTGCGGT GCCGATCCTG
ATCGCGGGGG CCCCTGGATC CGGGAAGACC ACGCTCCTGC GCGCGCTCAC GAAGTTCATC
CCGCGCGCCG AACCGGTGCT GGTGGCCGAG AACTACGAGG AACTGCATCT CGAGGAGCTG
GTCGACGACC GCGGCAGGCC CTGGTTCTAC GTGCTCCACA GCCACGTCGA GCAGGAGGCC
AACGCCGAGG GTGCGGGCTC GGTCACGATG AAGACCATCC TCGAACGCGG TCTCCAGGAG
GATGTCCGTC GGCTCGTGAT CGGTGAGGTC ACCGACCCGG AGACGATGGA GGTGCTGTTG
CAGGCCGCCA ACACGGGCAC GAGCGGCGTG CTGGCCACGA TCCACGCCGA GAGCGCGCTC
GACACGGTGA ACCGCGTCTT CGGGCTGTTG CTGCGCACGA CCCGTTACAC GGACCGGGCC
GCTGCCTATC TCATCGAGAG CACGTTGAAC CTGGTCGTGC ACTGCGCCTT GGTGCGCAAC
GAGCAGAGCC GTCGGCGGGT CGTCACGGGG ATCGGGTGGG TCGTTCCCCA TCCGGGCCAG
GTCGGTGGCA TGCCACGGAT GCAGATGGCG TTCGTGCGCG AGGGGTCGGC TCTCGTGCGT
GCCGTGGACC ATGCCAACGT CGCGCACCGG CTGGAGGAGC TCGTCGCGCG GAGGCGCTCG
TGA
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| Protein sequence | MATIAPGVGR TESLAPRSLA ELIERGPFER YLRETLTWSL VSRFLVDAQR HADDERQAAE
FDHWHERYRA LFSRAADEVL QTVSQEMLDH LSVLEKRAAF NANYVAIGER IRTLLQARPD
ADEIQRLPNV GPLLTIRLYG EMFDLGIVLL YYFASEVENI HIVDERVTVY TSDGRAWLSM
IDAAADGRAL KDRGAQFAQI SGGGVPQRFD PVHHAPNLTS PYGIRMALRQ RTTRSGEFLA
ALRLHHATNI TFDALIEQGV LSEEAGLMLA QAVRAAVPIL IAGAPGSGKT TLLRALTKFI
PRAEPVLVAE NYEELHLEEL VDDRGRPWFY VLHSHVEQEA NAEGAGSVTM KTILERGLQE
DVRRLVIGEV TDPETMEVLL QAANTGTSGV LATIHAESAL DTVNRVFGLL LRTTRYTDRA
AAYLIESTLN LVVHCALVRN EQSRRRVVTG IGWVVPHPGQ VGGMPRMQMA FVREGSALVR
AVDHANVAHR LEELVARRRS
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