| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_7082 |
|---|
| Symbol | |
|---|
| ID | 8331303 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Actinosynnema mirum DSM 43827 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013093 |
|---|
| Strand | + |
|---|
| Start bp | 8230406 |
|---|
| End bp | 8231971 |
|---|
| Gene Length | 1566 bp |
|---|
| Protein Length | 521 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 644947509 |
|---|
| Product | virulence factor MVIN family protein |
|---|
| Protein accession | YP_003104718 |
|---|
| Protein GI | 256381058 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0728] Uncharacterized membrane protein, putative virulence factor |
|---|
| TIGRFAM ID | [TIGR01695] integral membrane protein MviN |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCCATCG CCACGATCGT CAGCCGCGCC TCCGGCCTGC TGTCCAAGCT GATGCTCATC
ACGATCATCG GCTCGGGCGC GCTGAACGAC TCGTACCAGG CGGCGACCAC GCTGCCCACG
ATGATCAACG AGCTGCTGCT CGGCGGCGTG CTCACCAGCG TGGCCATCCC GATGCTGGTG
CGCGCCGAGA AGGAGGACCC CGACGGCGGG GAGTCCTACG CGCAGTGGCT GATCACCATG
GCGGTGACGC TGCTGGGCAT CGGCACGCTC ATCGCGCTCG CCTGCGCCCC GCTGCTGACG
GCGCTGTTCG TCGGCGACGC GGACCAGGCG AGGCCCGAGC TGGTCACCGC CTTCGCCTAC
CTGGTGCTGC CGGGCATCGT GTTCTACGGC CTGTCGGCGC TGCTGGGCGC GATCCTGAAC
ACCAAGAACG TGTTCGGCCT GCCCACCTGG GCCCCGGTGC TGAACAACGT CGTGGTGATC
GTGACCCTGG CGGTCTACGC GCTGGTCCCC GGCGAGATCT CGATGGACCC GGTGCGGATG
GGCGAGCCGA AGCTGCTGAT CCTGGGCCTC GGCACGATGC TCGGCGTCGC GGTGCAGGCG
TCGGTGCTGC TGCCCGCGAT GAAGCGGACC GGGTTCAAGT TCCGCTGGCG GTGGGGCTGG
GACCGCAGGC TCGCCGAGTT CGGCGGGCTG GCGTTCTGGG TGCTGCTGTA CGTGGGCCTC
GGCTTCGTCA GCATGATCGT GCTGACCCGC GTCGCCATGA ACGGCGAGGG CGCGCTGACC
GCGTACAACT TCCAGTGGCT CGTCGCGCAG GTGCCGTACG GCGTGCTGGG CGTGTCGCTG
CTGACCGCGC TGATGCCCAA GATGAGCAGG GCGGCGGCCG AGGACGACAC CCAGTCCCTG
GTCGGCGACC TGTCGCTGGG CAACCGGATG TCGGCGATCA TGCTCATGCC GTTCAGCGCG
CTGATGACGG TCGCGGGCGT GTCGATCGGC GTCGCGGTGT TCTCGCACGG CGCGTCCGGC
CTGGAGGGCG GCGAGCGGGT CGGCACGGCG CTGGCGCTGT CCGCGTTCGG CCTGGTGCCG
TACGCGATCA CGCTGCTCCA GCTGCGGGTG TTCTACGCGC TCAAGGACGC GCGGACGCCG
ACGATCATCC AGGGGATCAT CGTCGTGGTC CGGATCGGGT TGCTGTACGC GTTCCTGGCG
ATCTCGCCCC CGGACAAGCT GGCGGCGGGC GTGTCCATCG CGATGTCGCT GAGCTTCGTG
GTCGGCTGCC TGGTCGGCCA GCTGTGGCTG CGGGTGCGGC TGGGCAGGCT GCGCACCGGG
TACACCGTGT GGACGGTGTG CCTGTCCGTG GTGGCGTCGG CGATCGGGTT CGGCGTGGCG
ACGGGTCTCG CGTGGGGCCT GGTGTCGGTG CTGGGGCTGG AGAGCCCGGT GCCGACGGCC
GCGTGCGAGC TGGTCGTCCA GACCGTCGTC GGGCTCCCGC TGAGCTTCGG GCTGATGGCG
CTGTTCCGGG TGCCCGAGGT CAAGCCCGCG CTCGACAAGG TGATCCGCCT GGTGCGTCGC
CGGTGA
|
|---|
| Protein sequence | MAIATIVSRA SGLLSKLMLI TIIGSGALND SYQAATTLPT MINELLLGGV LTSVAIPMLV
RAEKEDPDGG ESYAQWLITM AVTLLGIGTL IALACAPLLT ALFVGDADQA RPELVTAFAY
LVLPGIVFYG LSALLGAILN TKNVFGLPTW APVLNNVVVI VTLAVYALVP GEISMDPVRM
GEPKLLILGL GTMLGVAVQA SVLLPAMKRT GFKFRWRWGW DRRLAEFGGL AFWVLLYVGL
GFVSMIVLTR VAMNGEGALT AYNFQWLVAQ VPYGVLGVSL LTALMPKMSR AAAEDDTQSL
VGDLSLGNRM SAIMLMPFSA LMTVAGVSIG VAVFSHGASG LEGGERVGTA LALSAFGLVP
YAITLLQLRV FYALKDARTP TIIQGIIVVV RIGLLYAFLA ISPPDKLAAG VSIAMSLSFV
VGCLVGQLWL RVRLGRLRTG YTVWTVCLSV VASAIGFGVA TGLAWGLVSV LGLESPVPTA
ACELVVQTVV GLPLSFGLMA LFRVPEVKPA LDKVIRLVRR R
|
|---|
| |