Gene Amir_6922 details

Gene Information

• Locus tag: Amir_6922
• ID: 8331142
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Actinosynnema mirum DSM 43827
• Kingdom: Bacteria
• Replicon accession: NC_013093
• Strand: +
• Start bp: 8053686
• End bp: 8054264
• Gene Length: 579 bp
• Protein Length: 192 aa
• Translation table: 11
• GC content: 72%
• IMG OID: 644947353
• Product: RNA polymerase, sigma-24 subunit, ECF subfamily
• Protein accession: YP_003104563
• Protein GI: 256380903
• COG category: [K] Transcription
• COG ID: [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog
• TIGRFAM ID: [TIGR02937] RNA polymerase sigma factor, sigma-70 family; [TIGR02983] RNA polymerase sigma-70 factor, sigma-E family

Plasmid Coverage information

• Num covering plasmid clones: 24
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGGTCGGTC CCGGACAGAA CAGCGGCGGT GTCGCGCGCG TACAGGACAC TCTGACGAAC 
CTGCGCATCC AGGACGGGAT CGCGCCCGCG CCAACAGGCC CGCTGACACT GGAGGACCTG 
TACCGCCAGC ACCGGATGCG GCTCATCCGG CTGGCGCTGC TGCTGGTCGA CGAGCCCGCC 
ACGGCGGAGG ACGTGGTGCA GGAGGCGTTC ACCGGCCTGC ACCGCAACTG GTCGAACCTG 
CGCGACGCCC AGGCGGCGGT CGGCTACCTG CGCACCGCCG TGGTGAACGG CTCGCGCAGC 
GTCCTGCGCC GGCGCAAGAC CGCGCGCGAC TACACCCCGC CGCACGTGGC GAACGCCCGC 
TCGGCGGAGA GCCTGGCGAT GCTGACGGCG GAGCACCAGG CGGTCGTGGC CGCCCTGTCG 
CAGCTGCCGC CGAGGCAGCG CGAGGTGCTG GTGCTGCGGT ACTACGGCGA CCTGTCGGAG 
GCCGAGATCG CGGAGGCCAC CGGCATCTCC AAGGGCACGG TGAAGTCCAC CGCCAGCCGG 
GCGCTGGACG CGCTGCAGAA GATCATGGCC AGCAACTAG 

 

Protein sequence

MVGPGQNSGG VARVQDTLTN LRIQDGIAPA PTGPLTLEDL YRQHRMRLIR LALLLVDEPA 
TAEDVVQEAF TGLHRNWSNL RDAQAAVGYL RTAVVNGSRS VLRRRKTARD YTPPHVANAR 
SAESLAMLTA EHQAVVAALS QLPPRQREVL VLRYYGDLSE AEIAEATGIS KGTVKSTASR 
ALDALQKIMA SN