| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_6905 |
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| Symbol | |
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| ID | 8331125 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Actinosynnema mirum DSM 43827 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013093 |
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| Strand | - |
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| Start bp | 8037878 |
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| End bp | 8039926 |
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| Gene Length | 2049 bp |
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| Protein Length | 682 aa |
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| Translation table | 11 |
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| GC content | 74% |
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| IMG OID | 644947336 |
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| Product | TRAP transporter, 4TM/12TM fusion protein |
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| Protein accession | YP_003104546 |
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| Protein GI | 256380886 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4666] TRAP-type uncharacterized transport system, fused permease components |
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| TIGRFAM ID | [TIGR02123] TRAP transporter, 4TM/12TM fusion protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAGCGGCT CAACCAATCG TCACGACGAG TCGACCGGCA ATCGCCACAA GACGGCCGCC
CCCGACCCGG CCCCCGACCC GACCCCCGAA CGGCCCCCGG ACGTCGCGGA CCTCATCGCC
GAGCACGACG AGGAGTTACC CGCCCGCTCC CTGTCCCGCC GCTGGGACCG CGCGGTCTGG
CTGGTCTGCC TGGCCACCGC GCTGCTCGTG CTCAAGCAGG TGTTCCTGCC GTTCAGCAAG
GGCAACCAGT TCTACCTCGT GCTGTTCCTC GGCGTGACCC TGCCGCTGGT GTTCCTCTGC
TACCGGCCGG GAAGGCCCGC CGCGTCCCGC GCCGAGCGCG ACGACCCCGC CCCCCTGGAC
TGGGCGCTGT CGCTGCTGGC CCTGCTGGTC GGCCTCTACC CGCTGCTCGG CGGCTTCGAC
TCGTTCCTCG ACCGCCAGGG CCAGCTCACC ACCCCCGACG TCGTCGCGGG CGCCGCCCTG
CTGCTGCTCG TGCTGGAGGC CGCCCGCCGC ACCACCGGCT GGGTGCTGCC CTCGGTGTGC
GTCGCCTTCA TCGCCTTCGC CTACTACGGC GGCTACCTGC CACCCGACTG GGCGATCTCG
CACGCCGGCG TGGACTTCAG CCAGATCATC AACGGCTTCT ACAACGACGC CACCGGCTTC
TACGGCACCC CGCTCGACGT CGCCGCGACC TACATCGTGC TGTTCACCCT CTACGGCGCG
GTGCTCAACA CCTCCGGCGC GGGCGCGTTC TTCGTGGACC TGAGCTTCGC CGCGTTCCGC
CGCTCCCGCA CCGCGCCCGG CCGCACCGCG GCCACCGCCG GGTTCCTGCT CGGCACGGTC
TCCGGCTCCG GCACCGCGAC CACAGTCAGC CTCGGCGCGG TCACCTGGCC GGTGCTGGAG
AAGGCCGGCT ACCCCAGGGA GAGCGCGGGC GGCCTGCTCG CCGCGTCCGG CATCGGCGCC
ATCCTGTCCC CGCCCACCCT CGGCGCCGCC GCGTTCATCA TCGCCGAGTA CCTGGAGGCC
ACCTACCTGG AGGTCCTGCT CTGGGCGACG CTGCCGACGC TGCTCTACTA CCTCGGCATC
GCGCTGGCCG TGGAGATCGA CGCCCGCCGG TTCGGGGCCA GGCCCGTCGA GGTCGGCACG
CCCGGCGCGT GGGCCGTGCT GCGGCGCGGC GGGCACCACC TGCTGTCGCT GTTCGTGATC
GTGGCGTTCC TGGCGCTGGA CGTCCCGGTT CAGCCGGCCG TCGTCTACGC CACCGCCATC
GCCGCGCTGT TCGCGCTGGT CGGCCAGCGG CACGACGTGC GCGGCTGGGC CCGGTCGCTG
GTCGACTCGC TGGCCACCGG GGTGCGCGCG GCCCTGCCGG TGATCGCGGT GTGCGCGGCG
GCGGGCGTGA TCACCTCCAC CATCACCAAG ACCGGGCTCG GGCAGGCGCT GGCGTCCGCG
CTGGTCGACC TGGCGTCCGC GCTCGTGTCG CACCCGACCG CCGTGCTGGC GCTCACCGCC
GTGCTCGCGG CCGTCGCGGT GAGCGTGCTC GGGCTGGCCG TGCCGGTGAC CGCGTCGTTC
ATCATCTCGT GGGTCGTCAT CGGGCCCGCG CTGGTCGAGC TGGGCGTGGA CCGGCCGGAG
ACGGCGATGT TCATCTTCTA CTACGCGGTG CTGTCCGAGG TGACCCCGCC GACGGCGCTC
GCCGCCGTCG CCGCGGCGGC CATCACCGGC GGCGACGTCG TGAGGACCAT GTGGCGCACC
TGGAAGTACA CGCTGCCCGC GTTCCTGGTG CCGCTGGCGT TCGTGCTCAC CGACCACGGG
TCCGCGCTGC TGCTGCGCGC GCCGGTCGGC GAGGTGCTGT GGGTGTTCGC CGCGTCCGCC
CTCGGGGTGG CCGCGCTCGC CGCCACCACC GGCGGCTGGA TCTTCCGCGA GGCGGGACCG
GTGGAGCGCG CGCTGTGCGC GCTGGCCGCG CTCGCCCTGC TGTACCTGGA ACCGGTCGTC
GTGGCGGTGG GCGTCGGCCT GCTCGCGCTC GCGGTGGCCG TCCACCTGCT GAGGAGGAGT
CATGCGTAG
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| Protein sequence | MSGSTNRHDE STGNRHKTAA PDPAPDPTPE RPPDVADLIA EHDEELPARS LSRRWDRAVW
LVCLATALLV LKQVFLPFSK GNQFYLVLFL GVTLPLVFLC YRPGRPAASR AERDDPAPLD
WALSLLALLV GLYPLLGGFD SFLDRQGQLT TPDVVAGAAL LLLVLEAARR TTGWVLPSVC
VAFIAFAYYG GYLPPDWAIS HAGVDFSQII NGFYNDATGF YGTPLDVAAT YIVLFTLYGA
VLNTSGAGAF FVDLSFAAFR RSRTAPGRTA ATAGFLLGTV SGSGTATTVS LGAVTWPVLE
KAGYPRESAG GLLAASGIGA ILSPPTLGAA AFIIAEYLEA TYLEVLLWAT LPTLLYYLGI
ALAVEIDARR FGARPVEVGT PGAWAVLRRG GHHLLSLFVI VAFLALDVPV QPAVVYATAI
AALFALVGQR HDVRGWARSL VDSLATGVRA ALPVIAVCAA AGVITSTITK TGLGQALASA
LVDLASALVS HPTAVLALTA VLAAVAVSVL GLAVPVTASF IISWVVIGPA LVELGVDRPE
TAMFIFYYAV LSEVTPPTAL AAVAAAAITG GDVVRTMWRT WKYTLPAFLV PLAFVLTDHG
SALLLRAPVG EVLWVFAASA LGVAALAATT GGWIFREAGP VERALCALAA LALLYLEPVV
VAVGVGLLAL AVAVHLLRRS HA
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