| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_6871 |
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| Symbol | |
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| ID | 8331091 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Actinosynnema mirum DSM 43827 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013093 |
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| Strand | - |
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| Start bp | 8006391 |
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| End bp | 8008553 |
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| Gene Length | 2163 bp |
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| Protein Length | 720 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 644947303 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_003104513 |
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| Protein GI | 256380853 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGGAAC GGGCTGGACA CCTGGTGGCT CCCTCGGGGC GTTCCCACAA CACCGACCCG
GCGCTGCGGG CCGGGGCCGA GTCGTTCGCG CGCACCTGGG CGACGGCCGT CATAGGCAGC
AGCTACGTGC CCATGACCCG GTCCGAGGTG GTCGAGCACC TGCGCGCCCT CACCGAGGTC
CTGGTGACCG CGCTGCTCGC CACCCCGTTC CGCCCGGCGC CCGGCCACGA GATCGGCGCC
CGGCTGGTCG AGGCGCACTT CACCGGCACC GACACGCTCG GCCGCACCGT GCAGCTCATG
GGCGACGACC TGTGCGCCGA GCTGGGCATC CCCGCCGACG ACTCCACCCG CACCCGCCTC
GCCGCCCTGC AAGGCGCGCT CGCGGCGGGC TACGCGCGCG CCCTGCGCGA GCGCACCCTC
GCCGAGCAGG AGGCGATCCG CGCCGCCGTG CTGGACGCCC GCGACCAGGC CGAGGCCGCG
CTGCGCGCCT CCGAGGCCCG GTTCCGCGCC ATGTTCACCG AGGCCGCCAT CGGCATCGGC
ATCGCCGACG TCGAGGGCCG CATCCTGGAC GTCAACCAGG CGCTGCAGGA CATGCTCGGG
TTCGGCGTCG AGGAGATGCG GCAGCACAAC ATCCGCGACC TGATGCACCC GGAGGACGGG
CCGTCGGTGT GGCGGCTCTA CGACCAGCTC ACGGCGGGCG AGCGCGACCA CTACCGCGCG
GAGAAGCGGT TCCGGCGGGC CGACGGCGAG CAGGTGTGGA CGCACCTGAC GCTGTCGCTG
GTGCGCGACG ACCACGGCGA CCCGCAGTAC CAGGTCGCCA TGATCGAGGA CGTCACCGAC
CGGCACCTGC TGCAGAACCG GCTGCGCTAC CAGGCGCTGC ACGACCCGCT CACCGGCCTG
CCGAACCGGG CGCTGTTCCT CGACCGGCTC AGCCGGGTCT TCGGCAACCC CGACAAGCAC
CGCGCGGGCC TGTGCTACCT GGACCTCGAC GGGTTCAAGG TGATCAACGA CAGCCTCGGC
CACGACATCG GCGACCAGCT GCTCGTCGAG GTCGGCAGGC GGCTGGACCG CTCGGTGTCC
GGCGACGGCA AGCTCGTGGC GCGCATGGGC GGCGACGAGT TCGTGATCCT GGTCGAGGAC
TCCACCCGCA CCGACGACAT CGTCGCCGTC GCGGACCGGG TGCTGCGCGA GCTGGAGTCC
CCGATCCGCA TCGGCGGGCA CGAGCTGACC GTGTCCGCGT CCATCGGCAT CGTCGAGCGC
GGGCTGGAGG GCACCAGCGC GCCCGACCTG GTGCGCGACG CCGACATCAC GCTGTACTGG
GCCAAGGCGG ACGGCAAGTC CCGCTGGGCG CTGTACGACC CGGACCGCAA CGCCAAGGAG
ATCGCCCGGT TCACCCTGTC CGCCACCATG CCCGCCGCGC TGGAGCGCGA CGAGTTCTAC
GTGGACTACC AGCCGCTGGT GCGGTTGGAG AACGCGCGGG TGGTCGGCGT GGAGGCGCTG
GTGCGCTGGC AGCACCCGGA GTTCGGGCGG CTCGCGCCGG ACCGGTTCAT CGAGCTGGCC
GAGGAGACCG GGCTGATCGT CCCGCTGGGC CGGTGGGTGC TGCGCAAGGC GTGCGAGCAG
GGGCGGCGGT GGCTGGACGA GTTCGCCGAG CTGGCGCCGT ACGTGAGCGT GAACCTGGCG
GTGCGGCAGT CCCGCGACCC CGAGCTGGTG CGCGACGTCA AGCGCATCCT GGACGAGACC
GGCCTGCCGC CCCGGCACCT GCAGCTGGAG CTGACCGAGA GCGCGATCAT GGGCACCGCC
GACGAGCCCC TCGAAGCGCT GCGGGCGCTG TCGGACATGG GCGTGCGCAT AGCGATCGAC
GACTTCGGCA CCGGCTACTC GAACCTGGCG TACCTCAAGC ACCTCCCGGT GCACGAGCTG
AAGATCGCCG GGTCGTTCAT GGAGGGGCTG CGGGCCGCCG ACGAGGAGGA CCCGGTGGAC
GCGCAGATCG TGTCCACGCT GGTGCAGCTC GCGCACGCGC TCGGCCTCGG CGTGACGGCG
GAGGGCGTGG AGACGCCGTC GCAGGCCAAG CGGCTGCACC GGATCGGCTG CGACACCGGG
CAGGGGTGGT TCTACGCCAA GCCGATGGCC CCGGAGGGCA TCGACGAGAT GCTGCGGCGC
TGA
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| Protein sequence | MTERAGHLVA PSGRSHNTDP ALRAGAESFA RTWATAVIGS SYVPMTRSEV VEHLRALTEV
LVTALLATPF RPAPGHEIGA RLVEAHFTGT DTLGRTVQLM GDDLCAELGI PADDSTRTRL
AALQGALAAG YARALRERTL AEQEAIRAAV LDARDQAEAA LRASEARFRA MFTEAAIGIG
IADVEGRILD VNQALQDMLG FGVEEMRQHN IRDLMHPEDG PSVWRLYDQL TAGERDHYRA
EKRFRRADGE QVWTHLTLSL VRDDHGDPQY QVAMIEDVTD RHLLQNRLRY QALHDPLTGL
PNRALFLDRL SRVFGNPDKH RAGLCYLDLD GFKVINDSLG HDIGDQLLVE VGRRLDRSVS
GDGKLVARMG GDEFVILVED STRTDDIVAV ADRVLRELES PIRIGGHELT VSASIGIVER
GLEGTSAPDL VRDADITLYW AKADGKSRWA LYDPDRNAKE IARFTLSATM PAALERDEFY
VDYQPLVRLE NARVVGVEAL VRWQHPEFGR LAPDRFIELA EETGLIVPLG RWVLRKACEQ
GRRWLDEFAE LAPYVSVNLA VRQSRDPELV RDVKRILDET GLPPRHLQLE LTESAIMGTA
DEPLEALRAL SDMGVRIAID DFGTGYSNLA YLKHLPVHEL KIAGSFMEGL RAADEEDPVD
AQIVSTLVQL AHALGLGVTA EGVETPSQAK RLHRIGCDTG QGWFYAKPMA PEGIDEMLRR
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