Gene Amir_6493 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAmir_6493 
Symbol 
ID8330705 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameActinosynnema mirum DSM 43827 
KingdomBacteria 
Replicon accessionNC_013093 
Strand+ 
Start bp7627731 
End bp7628345 
Gene Length615 bp 
Protein Length204 aa 
Translation table11 
GC content72% 
IMG OID644946922 
Productpentapeptide repeat protein 
Protein accessionYP_003104140 
Protein GI256380480 
COG category[S] Function unknown 
COG ID[COG1357] Uncharacterized low-complexity proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.364584 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGGACAACC CGGAGATCGA ACTGGAGCAG GTCGTCGGCG CGGACTACGC CGACGCCGTG 
CTGTACGAGC AGGTGTGGGA GCGGAAGTCG TTCGTGGGCT GCGACTTCTC CGAGGCGGAC 
ATGCGCGGCC TGGTGACCAG GGGCTGCACG TTCACCGACT GCAAGTTCAC CCGCACCGAC 
CTCGGCGACT CCCGGCACAC CACCTCGGCG TTCCGCTCCT GCCGCTTCGA CCGCGCGGTG 
CTCGGCGGGG CCGAGTTCAC CTCCTGCTCG CTGCTCGGGT CGATGTTCGT CGACTGCTCG 
ATGCGGCCGA TCACCATCAC CGAGACCGAC CTGACCCTGG TGAGCCTCAG CGGCGCGGTC 
CTCCCCAAGG CCTCGCTGGC CGGTCTGCGG ATGCGCGAGG CGAACCTGGA GTCCGCGAAC 
CTCACCGGCG CCGACCTGCG CGGGGCCGAC CTGTCCGGGG CGCGGCTGAC CGGGACGAAG 
CTGGTGGACG CCGACCTGCG CGGGGCGCGG CTGGACGCGA ACGGGCTGGT GCAGGGCGTG 
CTGCGCGGGG CGAAGGTCGA CCTCGACACC GCCGTGGCCT TCGCCGCCGC GCACGGGTTG 
CTGGTGCGGT CCTGA
 
Protein sequence
MDNPEIELEQ VVGADYADAV LYEQVWERKS FVGCDFSEAD MRGLVTRGCT FTDCKFTRTD 
LGDSRHTTSA FRSCRFDRAV LGGAEFTSCS LLGSMFVDCS MRPITITETD LTLVSLSGAV 
LPKASLAGLR MREANLESAN LTGADLRGAD LSGARLTGTK LVDADLRGAR LDANGLVQGV 
LRGAKVDLDT AVAFAAAHGL LVRS