| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_6442 |
|---|
| Symbol | |
|---|
| ID | 8330653 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Actinosynnema mirum DSM 43827 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013093 |
|---|
| Strand | + |
|---|
| Start bp | 7541532 |
|---|
| End bp | 7542710 |
|---|
| Gene Length | 1179 bp |
|---|
| Protein Length | 392 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 75% |
|---|
| IMG OID | 644946870 |
|---|
| Product | NLP/P60 protein |
|---|
| Protein accession | YP_003104089 |
|---|
| Protein GI | 256380429 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0791] Cell wall-associated hydrolases (invasion-associated proteins) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGACGTCT CCGGGCTGAT CGGGGCCCTC ATCCAGCCGA TGAAGGACGA CCTGGCCAAG
CTGCAGGGCG ACACCGGCGG CGCCTCGCGC GCGGCCGACT CGCTCGGCAG GGCCGCCTCC
TCGTTCGAGG AGATCGGCGC CAAGCACTCC GGCGCGGCCC GCGAGGTGCT CGGCACCTGG
TACGGCGAGA AGGCGGGCGT CTTCCAGGAC CGCGTGGCCA AGTTCGACGG CGGCGTCGAC
CTGCTCGCGC GCAACGCCAC CGCCGCGCGG GACGCCGTCG GCGCCGCCGT GTCCACGGTG
GAGTCCGGGC GCACCTCCGT GCAGCGCCTC ATCACCGAGT TCACCGACTG GGCGACCCCG
AAGCTGTCGA CCGCAGCCGC GCTGGACAAG ATCGGCGCGC AGGGCGCGGT GCTCGGCATC
ACCGCCGCGG TGACCGCGCG CGGCGTGGAG TACCAGGGGC GCTCCACCAA GGAGATGGAC
CGGCTCAGGG ACGAGCTGAA GGCCGTCGCC GACCGGCTCG CCGCGCTCCA GCCCGCCGAC
TTCGGCGGCG TCGGCGACGG CATCGGCGCG GAGGACGGCG GCACGACCAC GGCCGCGAGC
GCGCAGGACG GCGCGGGCAA GCGCGAGCCC TCCTCCTACT CCGGACCGGC CGACAGCGGT
GGCGGCGGGG GCGGGAGCGG CGGCGGTGGC GGGGGTGGCG GTGGCCACAG CGGCGGGGGT
GGCGGAGGGG GCGGCGGTGG CGTCGGGCCC CGGCTCCCGG TCGCGATCCC GCCCCAGCCG
GGCACCGGGG TGGGCGTCAA CCTGCCCGAC GGCAGCTCCG CCGAGGCCCC CAACGAGATC
GCCGCGCAGG CGGTCCGCAA CGCGCTGTCC GCGCTCGGCA CCCCGTACGT CTGGGGAGGT
CAGAACCCTC CCCAGGGCAC GGACTGCAGC GGGTTGACCA AGTGGGCGTA CGCGGGCGCG
GGCCTGGACA TCCCGCGGCT CGCCCAGTCG CAGACGGTCG GCGCGTCCGT CCCCGCCGGG
CAGCTGCTGC CCGGTGACCT GGTGGTGTGG GACGGGCACG TCGCGATGGT GATCGGCAAC
GGCCAGATGG TGGAAGCGGG CGATCCGGTT CAGGTGGGGG CCATCCGCAC CGACAACATC
GGCATGGCGT TCTACGGGTT CTACCGACCG ACGGGCTGA
|
|---|
| Protein sequence | MDVSGLIGAL IQPMKDDLAK LQGDTGGASR AADSLGRAAS SFEEIGAKHS GAAREVLGTW
YGEKAGVFQD RVAKFDGGVD LLARNATAAR DAVGAAVSTV ESGRTSVQRL ITEFTDWATP
KLSTAAALDK IGAQGAVLGI TAAVTARGVE YQGRSTKEMD RLRDELKAVA DRLAALQPAD
FGGVGDGIGA EDGGTTTAAS AQDGAGKREP SSYSGPADSG GGGGGSGGGG GGGGGHSGGG
GGGGGGGVGP RLPVAIPPQP GTGVGVNLPD GSSAEAPNEI AAQAVRNALS ALGTPYVWGG
QNPPQGTDCS GLTKWAYAGA GLDIPRLAQS QTVGASVPAG QLLPGDLVVW DGHVAMVIGN
GQMVEAGDPV QVGAIRTDNI GMAFYGFYRP TG
|
|---|
| |