| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_6388 |
|---|
| Symbol | |
|---|
| ID | 8330599 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Actinosynnema mirum DSM 43827 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013093 |
|---|
| Strand | - |
|---|
| Start bp | 7482054 |
|---|
| End bp | 7482566 |
|---|
| Gene Length | 513 bp |
|---|
| Protein Length | 170 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 644946816 |
|---|
| Product | membrane-flanked domain protein |
|---|
| Protein accession | YP_003104035 |
|---|
| Protein GI | 256380375 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3428] Predicted membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.00310241 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGCCTACC CGGACGACCT GCTCAGCCCC GCCGAGCACG TTGTGATCCA CAACCACCCG
CACTGGAAGA TGCTCCTGGT CCCCGTGCTG GTGCTCATCG CCGTCGCGGG CGGTGGCGGC
TACCTCGCCG CGCTGGCGTC CGGCAGCTCC TGGGAGCTGA CCGCCTGGAT CGCGATCGGC
GTGATCGGCC TGGCCCTGGT GCTCTGGCTG ACCGTTGCCC CGCTGGTCCG GTGGCGGACG
ACGCACTTCA TCATGACCAC GGACCGCGTC ATGTACCGCG TCGGCGTCTT CACCCGCACC
GGCCTGGACA TCCCGCTGAC CCGCATCAAC AGCGTCCGCT TCGAGCACAG CCTGCTCGAC
CGCGTCCTCG GCTGCGGCAC CCTGGTGATC GAGTCGGCCT CGGACGAGCC GCTGTCCTTC
GACGACATCC CGAACGTCGA GCGCGTGCAC TCCACGCTCT ACCGGGAGAT CAACGACAAC
CCGAACGACG ACTTCCAGCC CCGCACTGCG TAG
|
|---|
| Protein sequence | MAYPDDLLSP AEHVVIHNHP HWKMLLVPVL VLIAVAGGGG YLAALASGSS WELTAWIAIG
VIGLALVLWL TVAPLVRWRT THFIMTTDRV MYRVGVFTRT GLDIPLTRIN SVRFEHSLLD
RVLGCGTLVI ESASDEPLSF DDIPNVERVH STLYREINDN PNDDFQPRTA
|
|---|
| |