| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_6377 |
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| Symbol | |
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| ID | 8330588 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Actinosynnema mirum DSM 43827 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013093 |
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| Strand | + |
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| Start bp | 7468403 |
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| End bp | 7471081 |
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| Gene Length | 2679 bp |
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| Protein Length | 892 aa |
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| Translation table | 11 |
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| GC content | 77% |
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| IMG OID | 644946805 |
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| Product | RNA polymerase, sigma-24 subunit, ECF subfamily |
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| Protein accession | YP_003104024 |
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| Protein GI | 256380364 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGACCGTGC GCGACGCGGT GCGGAAGACT TGCCCGCGCG AGGGGAGGGA CCACGTGGCG
ACCGTTCCTG CTGATGTCCC GAGACCGGGG GACGCGGAAC TGATCGAGTC GGTGCGCGGG
GGTGATGTCG CCGCGTACGG ACAGCTGTAC GAGCGCCACG TCACCGCCGC CTACAACCTG
GCCCGGCAGT TGGCGCGCTC CTCGGCGGAG GCCGACGACT TAGTCTCCGA GGCGTTCTCG
AAGGTGCTCG ACGTGCTGCG GGGCGGCGGT GGCCCCGACG TGGCGTTCCG CGCCTACCTG
CTGACCGCGC TGCGGCACAA CGCCTACGAC AAGACCCGGC GGGACCGGAA GGTCGAGCTG
TCCGAGGACG TGTCCGAGGT CGCCCCCGAG GCGGTCAGCG TGCCGTTCCG GGACACGGCC
GTCGCGGGGC TGGAGCGCTC GCTCGCCGCG CGCGCCTTCG CCCGGCTTCC CGAGCGCTGG
CAGACCGTGC TGTGGCACAC CGAGGTCGAG GGCCAGTCGC CCGCCGAGGT CGCCCCCCTG
CTGGGGATGA CGGCCAACGG CGTGTCGGCG CTGGCCTACC GGGCCCGCGA GGGCCTCAAG
CAGGCATACC TCCAGGTGCA CCTGGCCGAG ACGCAGGCCG TGCGCTGCCG GGCGACCGTG
GACCGGCTGG GCGCGTGGAC CCGCGCGGGC CTGTCGAAGC GCGAGACCAC GCAGGTCGAG
ACGCACCTGG ACGAGTGCTC GGACTGCCGC AGGCTGGCCG CCGAGCTGGC GGACGTCAAC
GGGGCGCTGC GCGCCGCCAT CGCGCCGATC GTGCTGGGCG CGGGCACCGC CGGTTACCTG
GTCTCCTCGC GCAACTCGGC CTCCCCGGCG GCCACCGCCA CCGCGGGCGG CCTCGCGGGC
AACGCGCTGG CCGACTCGCT CGGCGGGGCC ACGGCGCAGG CCGCCGAAGG CGCCGCGAAC
ACCGCGGGCG CGGCAGGCGC CGCGGGCGGA CGTTCGGCGG GCGCCTCGGG CGCGGCCGGG
ATCGCGGGCG AGGTCGTGCG GGCGGCGCTG AGCGGCGGCC CGCGCCAGCT GCTCGGGCTG
GCCGCGTCCG CCGCCGCGCT GATCGTCGTG GTCGTCGTGG CCATCGCCGC GCCGGGCGCC
GGTTCGGGCC CCGACGTCGC GCAGTCCCCC GCCGCCGAGC AGAGCAGCGG CACCCCGGCC
TCCCCCGGCG CACCGGTCCC GCCCGCCTCG GGCGAGGCGG ACCCCGCGCC GTCCGAGGTC
CCCCCGTCGG GCGCGCCCGC CGACGAGGAC GAGGCGCCCG GCACGGTCCT GCCCCCGGCG
GGCACGGGCA ACGGGCCGGT CAGCACCCTG GACAACCCGC CGCCCCCGCC CGCCGGGGAC
CCCACGACCG ATCCGGACCC GACGACGGGG CCCACCACCC CGGAGCCCCC GGACCCGTCC
GACCCGCCGA AGCCGCCCGA CCCGCCGAAG CCGCCCCTCC CGGCGGCGCT GACGGCGACC
TGGCCCGACG ACTACTCGCT CACCCCCGGC CAGGACCCGA AGCCCTTGGA GGTCGTGGTC
GCCAACTCCG GCGAGGTGCT CTCCGAGATC CCGGTGCTGG CGCTGACCCT GCCCGAGGGC
GTGCGCCCGG TCGGCCTGTC CCGGCTGGCG GCGGCCGACG CCGACGACCT GGTGGAGTGC
GGGCCGGTGG ACGGCCCGTT CACCTGCCCG GCGCTCAGGG GCGTCGACCC GAAGGGCAGG
ACCTCGTTCC GGCTGCTGCT GGTGGCCGAC CGCACCGCGC AGGGCGGCGA GATCACCGGG
ACGCTCAACG CGGGCGCCGC CGTCACGGTC AAGCTGAACG TGCCGGTCAA GGTCCTGCCC
GAGCCCGACC AGGTGGCGCT GGAGGTGCAC AAGCGCGAGT ACCCGCGCTG GGGGCACTCC
GAGCTGGACA TCACCGCCGT CAACGCCGGG AGCCGCGCCG CCGGGCTGGA GCTGACCGCG
CGGGCCGGGG AGAACGTGTG GCTCAAGTGG AGCAGGAAGC GCGAGGCCTG CCGGGGTGGT
GAGACCGGGC TGGAGTGCCG GACCGACGTG CGCTCCGGCG GGAAGTTCCG GATCGTGGTG
AGCGTGTACG CGGTGCGGGC GGAGAACCCG GCCTCGGAGA ACCCGGCCTC GGAGGAGCCG
GCTTCGGAGG AACCGGGCCA GGAGCCCGGT CGGGAACCGG CCGCCGCCGA CGGCAGGCGG
GGGAACCACC GGCCCTGGGT CTGGGGCGAG GTGACCGTGA CGGCCCGGAT CGGGAGCGCG
TCGCAGACGA TCGTGGTGCC GGTGCGGGCC TGGGAGTACG ACCGCGGCCC GCAGCACCCG
CCGTCGAGCA GCACCCCGCC GACGACGACC ACGACCAGCA GCACCCCGCC GACCACCACC
ACGACGACCC CACCGCCCAC GACGACGACC ACGACCACCC GGCCGAGCCC GCCGTCGAGC
ACGCCCCCGA GCAGCCCGCC GTGGACGCCG CCGAAGACCC CGCCGCCGGG CCACACCCGG
CCGACCGACC CGCCGCTGCG GCAGGAGCCC GCCTCCACGC CGCCCGCCCA GGTCCCGCAG
GAGCAGCAGG CCGAGGTGGT GGTCGAGCTG CCGGTGTGCA CGACCGGCGA GCCGCCGGTG
CTGGACGAGG TGGTGACCGT CTGCCGGGTC GCCACCTGA
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| Protein sequence | MTVRDAVRKT CPREGRDHVA TVPADVPRPG DAELIESVRG GDVAAYGQLY ERHVTAAYNL
ARQLARSSAE ADDLVSEAFS KVLDVLRGGG GPDVAFRAYL LTALRHNAYD KTRRDRKVEL
SEDVSEVAPE AVSVPFRDTA VAGLERSLAA RAFARLPERW QTVLWHTEVE GQSPAEVAPL
LGMTANGVSA LAYRAREGLK QAYLQVHLAE TQAVRCRATV DRLGAWTRAG LSKRETTQVE
THLDECSDCR RLAAELADVN GALRAAIAPI VLGAGTAGYL VSSRNSASPA ATATAGGLAG
NALADSLGGA TAQAAEGAAN TAGAAGAAGG RSAGASGAAG IAGEVVRAAL SGGPRQLLGL
AASAAALIVV VVVAIAAPGA GSGPDVAQSP AAEQSSGTPA SPGAPVPPAS GEADPAPSEV
PPSGAPADED EAPGTVLPPA GTGNGPVSTL DNPPPPPAGD PTTDPDPTTG PTTPEPPDPS
DPPKPPDPPK PPLPAALTAT WPDDYSLTPG QDPKPLEVVV ANSGEVLSEI PVLALTLPEG
VRPVGLSRLA AADADDLVEC GPVDGPFTCP ALRGVDPKGR TSFRLLLVAD RTAQGGEITG
TLNAGAAVTV KLNVPVKVLP EPDQVALEVH KREYPRWGHS ELDITAVNAG SRAAGLELTA
RAGENVWLKW SRKREACRGG ETGLECRTDV RSGGKFRIVV SVYAVRAENP ASENPASEEP
ASEEPGQEPG REPAAADGRR GNHRPWVWGE VTVTARIGSA SQTIVVPVRA WEYDRGPQHP
PSSSTPPTTT TTSSTPPTTT TTTPPPTTTT TTTRPSPPSS TPPSSPPWTP PKTPPPGHTR
PTDPPLRQEP ASTPPAQVPQ EQQAEVVVEL PVCTTGEPPV LDEVVTVCRV AT
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