| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_6278 |
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| Symbol | |
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| ID | 8330489 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Actinosynnema mirum DSM 43827 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013093 |
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| Strand | - |
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| Start bp | 7365181 |
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| End bp | 7368375 |
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| Gene Length | 3195 bp |
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| Protein Length | 1064 aa |
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| Translation table | 11 |
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| GC content | 75% |
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| IMG OID | 644946709 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_003103928 |
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| Protein GI | 256380268 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.719663 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGCCCAAGC GGGTTGGCCG CGCTCCAGTG GTGCTCGACG ACCCCGAGGG GCCTGCGCGA
CCCGAGGCCG TCGCGCTGGG CGGCGTGACG CCGCCAGACC CGCCCTCGCT GCTGTGCGAC
CCCGAGGGCG TCGTGGTCAG GGCCGACGCC GCGGCTGCCG CGCTCGCCGG GGTCGCAGAC
CCCGGCGCGC TCGTCGGCCG CCCCCTCGGC GAGCTGCTCG CGGGCGACCC GCCGGACCAC
CGGCTCACCC GCGCCGACGG CGTCCAGGTC GCGGTGCGCG TCGTGCGCGG ACCCGCCGAC
GCCGCCGGGC TGACCACCGT CCTGCTGGTC GACGTGTCCG ACCTGGCCAA GGCCGCCGAC
GAGCTGCGCG ACGAGCAGCG GCGGCTGCGC GCGGTCCAGC GCGTGGCCGC CATCGGCTCC
TGGGAGTACG ACCCGGACAC CGGCGCGACC GTGTGGTCCA GGACGCACTA CGAGCTGCTC
GGCATCGAGC CCGGCTCGGT CGTGCCCGGC GCGCAGGCCG TGCTCGCGGT GACCCACCCG
GACGACCACG ACGTGGTCGC CAGCTACTGG AGCAACCGCG AGATCACCGG CGCGCCCATA
GACATCGTCT ACCGGGTCAT CCGGCCGGAC GGCGAGCTGC GCTGGATCAG GGGCGTCGCC
GAGGCCGAGC TGCGCGCCGA CGGCCGCGCC CGGCTGATCA CCGGCTACAT CAGGGACATC
ACCGAGCAGT GGCGCGCCGA CCGGGCGCTC GCCACCGAGC GCGCGCGCCT GCTGGAGGCG
CAGCGGATCG CCCGCATCGG CAGCTGGACC TACGACGTGC GGGGCCGCTC GCTGCACCGC
AGCGAGGTGC TGCTGGAGAT GTACTCGGCC ATCGGCGTCT CGCCCGACCG CCACGACCTG
CTCGGCGGCG TGCACGCCGA CGACCGCGCC CACCTGCTGG AGCTGCGCCG GAAGCTGTTG
CGCGCCAAGG ACGGCCGCAC GCAGGAGGCC GAGGTGCGCA GCGAGCTGGG CGACCGGGTC
TACGTGTGCC GCGCCCGCGT CGAGCGCGAA CCCGGCGGGC GCGCCCCGGT GCGGCTGCAC
GGGACCGTGC AGGACGTCAC CGAGGCGCGG GCCATGGAGC GGCAGCTGCG CGAGGACCGG
CGCAGGCTCG CCGACGCCCA GCGCGCCGCC CGGCTCGGCG TGTGGGAGTG GGACCTGGCG
ACCGGCGAGG TGGTGTGGTC GGACATGCTC GCCGAGCTGT TCGGCGTGCC GCGCGACGAG
CGCACCACGT ACCGGACCTA CCTGGACCTG GTGCACCCGG ACGACCGGGG CTGGGTCGAC
GACATGTGGC AGCAGCTGGC CACCGAGGAG ACCCCGGTGC AGTGCGAGCA CCGGATCGTG
CGGCGCGACG GCGCGGTGCG GGTGTTCCGC AGCCACGGCG TCGTCATCAA CGGGCCGGAC
GGGCGCACGC TCGCCGTGGG CACCGCGCAG GACATCACCG AGCAGCGCGT CGCCGAGACC
CGGATGCAGC GCTCCAGCCA GCGCTTCGCC GACCTGGTGT CGCTGACCCC GGTCGGCATC
GGGCTGTTCG ACGAGGGCGA GCGGCTGGTC GAGGCCAACG ACGCGCTGTG CGACCTGCTC
GGCATGGACC TGGAGCAGCT GCGCGGCATG ACCGCCGAGC AGCTCACCGA CCCGGCCGAC
AACGACGACC GGCTGCAGTC GGTCAGCCGG ATGACCGAGT TCGGCGCGGA GCGGGCGCAC
AAGATCCCGC AGCGGATACT GGTCAGGCCG GACGGCGAGC GGGTCTACTG CGAGCTGCAC
ATCGCGCTGT CCGTGCAGGA CGACGGCAGG CGGTTCTGGC TCATCGTGTT CCAGGACATC
ACCGAGCGCC GCCGCACCGC CGAGGCGCTG CGCCACCAGG CCACCCACGA CGACCTGACC
GGGCTGCCGA ACCGGGCGCT GGTCAAGGAG CTGCTGGGCG AGCTTCTGGA GGGCGGCGAC
CGGGCGAAGG TCGCGGTGCT GTTCTGCGAC ATCGACAACT TCAAGCGGGT CAACGACTCC
CTGGGCCACG ACGCCGGTGA CGAGCTGCTC GTCGCGCTGG CGCGGCGGCT GGAGGGCGGG
CTGCCCGACG GGTGCACGGC GGCCCGGCTG TCCGGCGACG AGTACGTGAT CATCTGCGAG
AACATCGACG CGGTGGGCGG CGTCGACGCG CTGGCGACCC GCGTCGCCGG GCTGCTGCGC
ACGGCCGTCC CGGTGCACGG GCAGCTGGTC CGGGTGTCGG CGTCGATCGG CGCTGCGGTG
CCCAACGGCT CGCGCGCCAC CGGCGCGGAC CTGCTGCGGT TCGCGGACGC GGCGATGTTC
GAGGCCAAGC GGTCCGGCGC CGGGCGGGTG TCGCTGGCGT CGGCGGCGCT GATCGCGTCG
GCCGACCGGC AGGTGCACCT GGAGGGGCAG CTGCGGGACG CGCTCGCCCA CGACGGGCTG
GCGCTGCACT ACCAGCCGGT GGTCGGCGTG GACGGGTCGG TGCAGACCGC CGAGGCGCTC
GTGCGGTGGC CGCACCCGGA CCGGGGGCTG CTGTCGCCGG ACATCTTCCT GCCCGTCGCC
GAGCAGGGCG ACCTGCTGCG CGAGCTGGAC CGGTGGGTGC TGCGGACCGC GCTCAAGGAG
GCGGCGACCT GGCCCGCGCC GGACGGCAAG CCCGTGGCGG TGGCGGTGAA CCTGGCCGGG
CTGGTGCCGG GCGACCCGGA GTTCGTGGAC ATCGTGTCGG CGACCATCGC CGAGTCCGGC
ATCCCGTGGG ACCGGGTGGT GCTGGAGCTG GTGGAGACGG CGCTGGTCGA CCTGCCCTCG
CGGGTGCGGC AGTCCATGGC GGAGCTGGTC GAGCGCGGCG TGCAGTTCGC CGTGGACGAC
TTCGGCACCG GGTACTCGTC GCTGGCGCGG CTCAAGGACC TGCCCGCGCA GATCATCAAG
GTCGACCGGC GGTTCGTGGC CGGGGTGGGC AGCGACTCGT CGGACTTCGC GGTGGCGCGG
GCCGTGGTGG ACATGGCGCG GGCGATGGGG CGCAAGTGCG TCGCGGAGGG CGTCGAGACC
GCCACCCAGT TCCACGTGCT GCGCGGGGTC GGGGTGGACG CGTACCAGGG CTGGCTGTTC
TCCCGGCCGG TGCCGCCGAA GGAGTTCCGG GCGGTGCTCG CGCTGGGGCC GCTGCACATC
CCCAAGGCCG GGTGA
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| Protein sequence | MPKRVGRAPV VLDDPEGPAR PEAVALGGVT PPDPPSLLCD PEGVVVRADA AAAALAGVAD
PGALVGRPLG ELLAGDPPDH RLTRADGVQV AVRVVRGPAD AAGLTTVLLV DVSDLAKAAD
ELRDEQRRLR AVQRVAAIGS WEYDPDTGAT VWSRTHYELL GIEPGSVVPG AQAVLAVTHP
DDHDVVASYW SNREITGAPI DIVYRVIRPD GELRWIRGVA EAELRADGRA RLITGYIRDI
TEQWRADRAL ATERARLLEA QRIARIGSWT YDVRGRSLHR SEVLLEMYSA IGVSPDRHDL
LGGVHADDRA HLLELRRKLL RAKDGRTQEA EVRSELGDRV YVCRARVERE PGGRAPVRLH
GTVQDVTEAR AMERQLREDR RRLADAQRAA RLGVWEWDLA TGEVVWSDML AELFGVPRDE
RTTYRTYLDL VHPDDRGWVD DMWQQLATEE TPVQCEHRIV RRDGAVRVFR SHGVVINGPD
GRTLAVGTAQ DITEQRVAET RMQRSSQRFA DLVSLTPVGI GLFDEGERLV EANDALCDLL
GMDLEQLRGM TAEQLTDPAD NDDRLQSVSR MTEFGAERAH KIPQRILVRP DGERVYCELH
IALSVQDDGR RFWLIVFQDI TERRRTAEAL RHQATHDDLT GLPNRALVKE LLGELLEGGD
RAKVAVLFCD IDNFKRVNDS LGHDAGDELL VALARRLEGG LPDGCTAARL SGDEYVIICE
NIDAVGGVDA LATRVAGLLR TAVPVHGQLV RVSASIGAAV PNGSRATGAD LLRFADAAMF
EAKRSGAGRV SLASAALIAS ADRQVHLEGQ LRDALAHDGL ALHYQPVVGV DGSVQTAEAL
VRWPHPDRGL LSPDIFLPVA EQGDLLRELD RWVLRTALKE AATWPAPDGK PVAVAVNLAG
LVPGDPEFVD IVSATIAESG IPWDRVVLEL VETALVDLPS RVRQSMAELV ERGVQFAVDD
FGTGYSSLAR LKDLPAQIIK VDRRFVAGVG SDSSDFAVAR AVVDMARAMG RKCVAEGVET
ATQFHVLRGV GVDAYQGWLF SRPVPPKEFR AVLALGPLHI PKAG
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