| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_6272 |
|---|
| Symbol | |
|---|
| ID | 8330483 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Actinosynnema mirum DSM 43827 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013093 |
|---|
| Strand | + |
|---|
| Start bp | 7360096 |
|---|
| End bp | 7361655 |
|---|
| Gene Length | 1560 bp |
|---|
| Protein Length | 519 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 76% |
|---|
| IMG OID | 644946703 |
|---|
| Product | protein of unknown function DUF43 |
|---|
| Protein accession | YP_003103922 |
|---|
| Protein GI | 256380262 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1568] Predicted methyltransferases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGCAGCAG ATGAGCCGAG CGACCGCGTC CGCGACCTCC TGGCGAGCCG GGGGGCGCAC
GCGCGCCCGC TGCGCCGGGT GCTGACCCTG CTGTGCCGGG ACTGGCACAG CCTCGCGGAG
CTGGTCCGGC TGCCCGCCGT GCCGCGCCGC ACCGTGCAGG AGCTGCTGAC GGCGGCGCAG
GACGACCTGG AGAGCAGGGG CGACCGGCAC CGGATCGTCC CCGCGCGGGC CGCGGCGTAC
GCCCGGTACG CGGCCGAGGA GCTGCCGGAC GCGACGGACG CGCTGGTGGC GGAGAACCCG
GACCTGCTGG CGGTGGTCCG CGCGGACATC GCGTCCGTGC CGCCGCCGGT GGCCGCGCTG
GACCACGTGC AGGCCACGCC GGAGACGGCG CTGAAGCGGG CGCTGTGGCT GACCACGACC
TACGACCTGT CCGGCCGGAC CCTGCTGTGC CTGGGCGACC ACGACCTGAC GTCGCTGGCG
GTGTGCGCGG TGGACCCTGG CGTGCGGGTG GTCGTGGTGG ACGTGGACGA CCGGCTGCTG
GCGCACGTGG ACCGGATCGC GGCCGAGCGC GGCTGGGACG TCACGACGCT GCACGCGGAC
TTCCGCTTCG GGTTGCCGCC GTCGGTGCTG GAGAGCGCGG ACCTGGTGTT CAGCGACCCG
CCTTACACGC CGGAGGGCAT GGGCCTGTTC GCGGCGCGCG GCGTGGAGTG CCTGGGGCGG
GACGGGAGGC TGCTGCTGGC GCACGGCTCC AGCGACCGCA CCCCGGCGCT GGGGTTGAAG
GTGCAGCAGG AGCTGCTGCG GCTGGGGCTG CTGTTCGAGG CGGTGCTGCC CGCGTTCCAC
CGGTTCGACG GGGCGCAGGC GATCGGCAGC GCGGCGGACC TGTACGTGTG CAGGCCGACG
TCGCGGCGGT CGGTGTCGGT GACCAAGCCG GGGATCTACA CGCACGGCCC GCAGTCGCTG
GAGTCCGAGG GCCCGAGCGG CAAGGCCCTG GAGTCGCTGG TGGACCTGGC CCCGCGTCCG
GAGTCGAGCC CGCCGCCGAA GCCGAGGCAG CCGGGCTGGG CCGAGCCGGT GGGCAGGGGG
GCGGCGTCGC TGGCCGTGGA CCTGAGCGCC GATCCGGGCC CGTGGCTGCT GCGGACGCTG
CTGGCGTGCT CGCCGGGGCG GATGGCGGCG CTGGTGCCGA ACAACCACCC GGACGTCGCG
TCGGAGAAGG GGCAGAAGGC GCTCGCGGAG CTGGTGGGGA CGCGGTTCTC GCTGCGCTAC
CTGCGTTCCA CGCCGGACGG GAAGACGTGC GTCGTGGTGG CGGACCAGGT GCTGGCGGGC
GGGTTGGACG AGGGCGGGTT GGCGGTGCGG GAGGTGCTGT CGCGCGCGCA CGGCAAGCTG
GGGAACGTGT GGCGGGAGGC GCTGGTGACG GCGACCAGGG GCGGTCTGAC GAAGCGGGCG
GCGCGGGAGC GCATCACCGA GGCGGTGGGT GAGGCGGCGG ACCTGGAGGA GCGCCTGATC
GACCTGCCGA GGCACCGGAT CGCCGCGCTG CTGCCGCTGA TCGCCGCGTC CGCGCGCTGA
|
|---|
| Protein sequence | MAADEPSDRV RDLLASRGAH ARPLRRVLTL LCRDWHSLAE LVRLPAVPRR TVQELLTAAQ
DDLESRGDRH RIVPARAAAY ARYAAEELPD ATDALVAENP DLLAVVRADI ASVPPPVAAL
DHVQATPETA LKRALWLTTT YDLSGRTLLC LGDHDLTSLA VCAVDPGVRV VVVDVDDRLL
AHVDRIAAER GWDVTTLHAD FRFGLPPSVL ESADLVFSDP PYTPEGMGLF AARGVECLGR
DGRLLLAHGS SDRTPALGLK VQQELLRLGL LFEAVLPAFH RFDGAQAIGS AADLYVCRPT
SRRSVSVTKP GIYTHGPQSL ESEGPSGKAL ESLVDLAPRP ESSPPPKPRQ PGWAEPVGRG
AASLAVDLSA DPGPWLLRTL LACSPGRMAA LVPNNHPDVA SEKGQKALAE LVGTRFSLRY
LRSTPDGKTC VVVADQVLAG GLDEGGLAVR EVLSRAHGKL GNVWREALVT ATRGGLTKRA
ARERITEAVG EAADLEERLI DLPRHRIAAL LPLIAASAR
|
|---|
| |