| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_6223 |
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| Symbol | |
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| ID | 8330434 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Actinosynnema mirum DSM 43827 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013093 |
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| Strand | + |
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| Start bp | 7298025 |
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| End bp | 7300133 |
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| Gene Length | 2109 bp |
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| Protein Length | 702 aa |
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| Translation table | 11 |
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| GC content | 77% |
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| IMG OID | 644946655 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_003103874 |
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| Protein GI | 256380214 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.611426 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGACGG CCGGAGGGGC GGGGGACGCC CCGGAGCCGC GCGCCGATCT CGGGGCGGCC
ACCGCCCACG AGGGCTTCGC GCAGCGCTGG GCCGAAGCGC TTCCCGACCC CGCGGCCCAC
CTCGGGACCC TGGTCCGGCT GACCGCCGGC CTGTCCTCGG TGGACGGCCA GGAGCCCGAG
GAGGCCGCCC GTCGGGTCGG GCGCGCGCTG GTCGGGCACG GGCCGGCCCG GCCCGGCGTG
CTGGAGGGGA CCATCGCGTT CCTGGCCGAG AACCTGCGTC CGCACCTGGT CGCCCTGCAC
GGGGCGGACC ATCCGGCCGC CTCCCGCGTC CCCGCCGTGC TGGGCGCGGT CGCCGCCGGG
TTCGCCGAGG CTGCGGCGGA GCTGGCCGCC GACGAGGTGC GCGAGGAGGG GGAGGCGAAG
TTCCGGGCCG TGTGGCGCAC GTCCGCGCTG GCCATCGCCG AGGTCGCCTC GGACGGCCGC
GTGGTCGACC ACAACGCGGC GCTGCCCGCG ATCCTCGGCT ACCCGCCGGA CCGCGTCGCC
GGGTTGAGCG CGCGGGAGGT GGTGCACCCG GACGACCTGC CCGCGCTGCG CAGGCTCGGC
GGGCAGCTGC TCTCGGGTGA GCGGGACGGG GTGCAGGTCG AGAAGCGGTT GGTGCGCGCG
GACGGCGAGG CGATCCCGGC GCAGCTCGCG ATCACGCCGG TGCGCGGGCG CGACGGGGAC
GTGCGCTGCT ACGTGGCGGT GGTCGAGGAC CTGGACGAGG TCAGGGCGCT GCAGCTGCAA
CTGGTGCGGC AGAGCCTGAA CGACCCGCTG ACCGGGTTGG CCAACCGGGC CCAGTTCCTC
GGCTGGTTGG AGAGCGAGGA GGGGCCGCAG GGCTCGGGGT CGCTGGTGGT GGCGCTGCTC
GACCTGGACG GGCTCCGGGT GGTCAACGGG GCGTTCGGGC ACGAGGTCGG CGACCGGGTG
CTGCGGGCCG CGGTGTCCGT GCTGGGGACG GTGTTCGGCG GTGGCGCGCG GATCGCGCGG
CTGGGCGGCG ACGAGTTCGG CGTGCTGGTG ACCGGCTCGG ACCTGCCCTC GGTGCTGGAC
CTGGTCGAGC AGGCGCTGCG CGAGCTGGCC GAGCCGGTGT GGTGGGAGGA GCGGGGCATC
GGGGTCGCGG CCAGCGTGGG CGTGGTCGCC CGCACCGGAC CCGGCCTGCC GGACGGGGAG
CTGCTGCGCC GCGCGGGCGT GGCGCTGGAC TGGGCCAAGG ACTCCGGCAA GACCGGGTGG
TCGCTGTACG ACCCGGACCG GGACGCGCGC GAGCGGGACC GGTCGGCGCT GGCCGCGTCG
GTGGCGGGCG GGGCCGAGCA GGGCGACTTC CGGGTGGACT ACGAGCCGGT GCACGCGCTG
GCCGACCGGT CGGTGGTGGC CGTCGAGGCG GTGCTGCGCT GGGACCACGC CGAGCGCGGG
CTGGTGGACC TGCGGTGGTT GGGGCCGCTG CTGGAGCGCA CCGGCATGGG GCTGCGGCTG
GACCGGTGGG CGCTGGAGCG GGCGTGCGCG CAGGCCGGGC GGTGGTACGC GGCGCTGGGC
GAGGAGGCGC CGGTGCTGTC GGTGGACCTG AGCGTGCGGC AGTGCCAGGA ACCGGAGCTG
GTGGCGTGGG TGCGGCAGGT GCTGCGGGAC ACCGGGCTGC CGCCGCACAA GCTGCGGTTC
GAGCTGCCGG AGCGGTTGCC GTCGGCGCTC AGCGAGGAGC AGGTGGAGGA GCTGAACATC
CTGGCCTCGC ACGGGGTGCT GCTCGCGCTG GACCAGCTGG GCGGCGGGAA CGTGGCGGTG
GACCGGATCA GGCAGCTGCC GCTGTCGGCG CTGAAGTTCG GCGGGCCGCC GGTGCGGGGG
CTGGCCGAGG GCGCGAACCT GGTGGACCGG GCGGCGGCGG TGGCGCTGCT GTCGTGGAGC
CGGCAGCTGG GGCTGGAGCT GCACGCGGTG CACGTGAGCA CCTCGGACGA GGCGCGGCGG
CTGCGGGAGC TGGGCGTGAG CGCGGGGCAG GGCGTGCTGT TCAACGCCGA ACCACTGACC
GGGGCGGACG TGGCCGAGCT GCTGGGGCTG GACCCGGACG GGGACGAGGA CCCGGACGAG
GACGCGTGA
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| Protein sequence | MKTAGGAGDA PEPRADLGAA TAHEGFAQRW AEALPDPAAH LGTLVRLTAG LSSVDGQEPE
EAARRVGRAL VGHGPARPGV LEGTIAFLAE NLRPHLVALH GADHPAASRV PAVLGAVAAG
FAEAAAELAA DEVREEGEAK FRAVWRTSAL AIAEVASDGR VVDHNAALPA ILGYPPDRVA
GLSAREVVHP DDLPALRRLG GQLLSGERDG VQVEKRLVRA DGEAIPAQLA ITPVRGRDGD
VRCYVAVVED LDEVRALQLQ LVRQSLNDPL TGLANRAQFL GWLESEEGPQ GSGSLVVALL
DLDGLRVVNG AFGHEVGDRV LRAAVSVLGT VFGGGARIAR LGGDEFGVLV TGSDLPSVLD
LVEQALRELA EPVWWEERGI GVAASVGVVA RTGPGLPDGE LLRRAGVALD WAKDSGKTGW
SLYDPDRDAR ERDRSALAAS VAGGAEQGDF RVDYEPVHAL ADRSVVAVEA VLRWDHAERG
LVDLRWLGPL LERTGMGLRL DRWALERACA QAGRWYAALG EEAPVLSVDL SVRQCQEPEL
VAWVRQVLRD TGLPPHKLRF ELPERLPSAL SEEQVEELNI LASHGVLLAL DQLGGGNVAV
DRIRQLPLSA LKFGGPPVRG LAEGANLVDR AAAVALLSWS RQLGLELHAV HVSTSDEARR
LRELGVSAGQ GVLFNAEPLT GADVAELLGL DPDGDEDPDE DA
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