Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Amir_6223 |
Symbol | |
ID | 8330434 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Actinosynnema mirum DSM 43827 |
Kingdom | Bacteria |
Replicon accession | NC_013093 |
Strand | + |
Start bp | 7298025 |
End bp | 7300133 |
Gene Length | 2109 bp |
Protein Length | 702 aa |
Translation table | 11 |
GC content | 77% |
IMG OID | 644946655 |
Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
Protein accession | YP_003103874 |
Protein GI | 256380214 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.611426 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAGACGG CCGGAGGGGC GGGGGACGCC CCGGAGCCGC GCGCCGATCT CGGGGCGGCC ACCGCCCACG AGGGCTTCGC GCAGCGCTGG GCCGAAGCGC TTCCCGACCC CGCGGCCCAC CTCGGGACCC TGGTCCGGCT GACCGCCGGC CTGTCCTCGG TGGACGGCCA GGAGCCCGAG GAGGCCGCCC GTCGGGTCGG GCGCGCGCTG GTCGGGCACG GGCCGGCCCG GCCCGGCGTG CTGGAGGGGA CCATCGCGTT CCTGGCCGAG AACCTGCGTC CGCACCTGGT CGCCCTGCAC GGGGCGGACC ATCCGGCCGC CTCCCGCGTC CCCGCCGTGC TGGGCGCGGT CGCCGCCGGG TTCGCCGAGG CTGCGGCGGA GCTGGCCGCC GACGAGGTGC GCGAGGAGGG GGAGGCGAAG TTCCGGGCCG TGTGGCGCAC GTCCGCGCTG GCCATCGCCG AGGTCGCCTC GGACGGCCGC GTGGTCGACC ACAACGCGGC GCTGCCCGCG ATCCTCGGCT ACCCGCCGGA CCGCGTCGCC GGGTTGAGCG CGCGGGAGGT GGTGCACCCG GACGACCTGC CCGCGCTGCG CAGGCTCGGC GGGCAGCTGC TCTCGGGTGA GCGGGACGGG GTGCAGGTCG AGAAGCGGTT GGTGCGCGCG GACGGCGAGG CGATCCCGGC GCAGCTCGCG ATCACGCCGG TGCGCGGGCG CGACGGGGAC GTGCGCTGCT ACGTGGCGGT GGTCGAGGAC CTGGACGAGG TCAGGGCGCT GCAGCTGCAA CTGGTGCGGC AGAGCCTGAA CGACCCGCTG ACCGGGTTGG CCAACCGGGC CCAGTTCCTC GGCTGGTTGG AGAGCGAGGA GGGGCCGCAG GGCTCGGGGT CGCTGGTGGT GGCGCTGCTC GACCTGGACG GGCTCCGGGT GGTCAACGGG GCGTTCGGGC ACGAGGTCGG CGACCGGGTG CTGCGGGCCG CGGTGTCCGT GCTGGGGACG GTGTTCGGCG GTGGCGCGCG GATCGCGCGG CTGGGCGGCG ACGAGTTCGG CGTGCTGGTG ACCGGCTCGG ACCTGCCCTC GGTGCTGGAC CTGGTCGAGC AGGCGCTGCG CGAGCTGGCC GAGCCGGTGT GGTGGGAGGA GCGGGGCATC GGGGTCGCGG CCAGCGTGGG CGTGGTCGCC CGCACCGGAC CCGGCCTGCC GGACGGGGAG CTGCTGCGCC GCGCGGGCGT GGCGCTGGAC TGGGCCAAGG ACTCCGGCAA GACCGGGTGG TCGCTGTACG ACCCGGACCG GGACGCGCGC GAGCGGGACC GGTCGGCGCT GGCCGCGTCG GTGGCGGGCG GGGCCGAGCA GGGCGACTTC CGGGTGGACT ACGAGCCGGT GCACGCGCTG GCCGACCGGT CGGTGGTGGC CGTCGAGGCG GTGCTGCGCT GGGACCACGC CGAGCGCGGG CTGGTGGACC TGCGGTGGTT GGGGCCGCTG CTGGAGCGCA CCGGCATGGG GCTGCGGCTG GACCGGTGGG CGCTGGAGCG GGCGTGCGCG CAGGCCGGGC GGTGGTACGC GGCGCTGGGC GAGGAGGCGC CGGTGCTGTC GGTGGACCTG AGCGTGCGGC AGTGCCAGGA ACCGGAGCTG GTGGCGTGGG TGCGGCAGGT GCTGCGGGAC ACCGGGCTGC CGCCGCACAA GCTGCGGTTC GAGCTGCCGG AGCGGTTGCC GTCGGCGCTC AGCGAGGAGC AGGTGGAGGA GCTGAACATC CTGGCCTCGC ACGGGGTGCT GCTCGCGCTG GACCAGCTGG GCGGCGGGAA CGTGGCGGTG GACCGGATCA GGCAGCTGCC GCTGTCGGCG CTGAAGTTCG GCGGGCCGCC GGTGCGGGGG CTGGCCGAGG GCGCGAACCT GGTGGACCGG GCGGCGGCGG TGGCGCTGCT GTCGTGGAGC CGGCAGCTGG GGCTGGAGCT GCACGCGGTG CACGTGAGCA CCTCGGACGA GGCGCGGCGG CTGCGGGAGC TGGGCGTGAG CGCGGGGCAG GGCGTGCTGT TCAACGCCGA ACCACTGACC GGGGCGGACG TGGCCGAGCT GCTGGGGCTG GACCCGGACG GGGACGAGGA CCCGGACGAG GACGCGTGA
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Protein sequence | MKTAGGAGDA PEPRADLGAA TAHEGFAQRW AEALPDPAAH LGTLVRLTAG LSSVDGQEPE EAARRVGRAL VGHGPARPGV LEGTIAFLAE NLRPHLVALH GADHPAASRV PAVLGAVAAG FAEAAAELAA DEVREEGEAK FRAVWRTSAL AIAEVASDGR VVDHNAALPA ILGYPPDRVA GLSAREVVHP DDLPALRRLG GQLLSGERDG VQVEKRLVRA DGEAIPAQLA ITPVRGRDGD VRCYVAVVED LDEVRALQLQ LVRQSLNDPL TGLANRAQFL GWLESEEGPQ GSGSLVVALL DLDGLRVVNG AFGHEVGDRV LRAAVSVLGT VFGGGARIAR LGGDEFGVLV TGSDLPSVLD LVEQALRELA EPVWWEERGI GVAASVGVVA RTGPGLPDGE LLRRAGVALD WAKDSGKTGW SLYDPDRDAR ERDRSALAAS VAGGAEQGDF RVDYEPVHAL ADRSVVAVEA VLRWDHAERG LVDLRWLGPL LERTGMGLRL DRWALERACA QAGRWYAALG EEAPVLSVDL SVRQCQEPEL VAWVRQVLRD TGLPPHKLRF ELPERLPSAL SEEQVEELNI LASHGVLLAL DQLGGGNVAV DRIRQLPLSA LKFGGPPVRG LAEGANLVDR AAAVALLSWS RQLGLELHAV HVSTSDEARR LRELGVSAGQ GVLFNAEPLT GADVAELLGL DPDGDEDPDE DA
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