Gene Amir_6188 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAmir_6188 
Symbol 
ID8330399 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameActinosynnema mirum DSM 43827 
KingdomBacteria 
Replicon accessionNC_013093 
Strand
Start bp7252288 
End bp7253970 
Gene Length1683 bp 
Protein Length560 aa 
Translation table11 
GC content69% 
IMG OID644946620 
Productextracellular solute-binding protein family 5 
Protein accessionYP_003103839 
Protein GI256380179 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0747] ABC-type dipeptide transport system, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.215725 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTTCCTGA AGGCACAGCG CTCACGCAGG CGGCTGGCGG CGGTGGTCCT CGCCGCGGCG 
TTGGCAGCGG CAGGCTGCGG CGGTTCCGGG GGCGGCGGCG GGACGGCCGC GGACACCCTC
GTCGTCTACA CCGGCCAGGC GGGTGACTGG CAGCTCAACT TCAACCCGTA CTCGCCCACC
CGCATCGAGG GCCTCGGCAC GATCTTCGAG CCGCTGTTCT TCTACAACGT CACCGGTTCC
ACCGACCCCG TGAAGCGCCT CGGCGAGAGC TTCGAGTGGA ACGCCGACGG CACCGTGCTC
TCCATCACCA CCCGCTCCGG GGCCACCTGG ACGGACGGGA AGCCGTTCAC CGCCAAGGAC
GTCGTCTTCA CCCTGGACAT GGTCGCGAAG ACCCCGACCA TGAACAGCGT CGGCTACAAG
GGCAAGGCCG CCGCGATCGA CGACACGCAC CTCACGGTCA CCTTCGACGA GCCCTCGTAC
CTGGTCGGCC CGCAGGTCCT CGGCCGCACC TGGATCGTCC CCGAGCACCT GTGGGGCCAG
CTCTCCGACC CGGCGACCAA CGTCATCGCC ACCCCCGTCG GCACCGGCCC GTTCCAGCTC
GACGAGTTCA AGGCGCAGGC CTTCACCCTC AAGGCCAACG AGGGCTACCA CAGCGGCGCG
CCCGCGGTGA AGAAGATCCG CTACCTCTCG CTGTCCGGCA ACCAGGCGGG CGCCGACGCG
CTCAAGGCGG GCCAGGTCGA CTGGCAGACC GGCCCCGTCC CGGACATCGC GAACGTCGAG
AAGAACTACC CCGGCTACAA GGCCAACACC ACCCCGATGA ACCAGGCCGC GCTGCTGACC
TGCTCCAACG CCGCCCTGGG CTGCGAGGGC CCGCAGACCG ACCCGGCCGT GCGCAAGGCC
GTCTACTACG CGCTCAACCG CACCCAGGTG AACTCGCTCG CGTTCGAGAA CACCGCCAGC
GAGATCTCCC CCGGATTCGC GCTCCTCGGC CGCGACGACG CCGTCATCTC CAGCAAGCTC
GCCGAGCGCA CCGCCCCCAT GCAGCCCGAC ACCGCCAAGG CCGGGCAGCT CCTCGAAGGC
GCCGGCTACG CCAAGGGCGG CGACGGCCTC TACGCCAAGG ACGGCCAGCA GCTCGCCCTC
AACGTCAAGG TCGTCGCGGG CTGGACCGAC TACATCACCG CCCTGGACAC CATGACCCAG
CAGCTCCAGC AGGCGGGCAT CAAGCTCAAC GTGCAGCAGT CGTCCTGGAA CGAGTGGGCC
GACGCGCGCG GCCAGGGCAA GTACCAGCTG ATCATCGACT CGCTCTACCA GGGCCCGGCC
GCCGACCCGT TCTACCTCTA CAGCTACTTC TTCGCGACCT CCTCCACCGC GCCGGTCGGC
CAGACCGCCA CCCCGAACTT CGCCCGCGTC TCCGACCCGG CCATCGACGC CGCGATCGAC
GCGCTCAAGG CCATCGACCC CAAGGACACC GCCGCGCGCC AGCCGCACCT GGACGCCATC
CAGACCCGCG TCGAGGAGAC CGTCCCCTAC ATCCCGCTGC TCACCGCGGG CACCACCAGC
GAGTACAACG CGAAGAAGTT CACCGGCTGG CCCGACGAGT CCAACCCGTA CGCGTTCTTC
GCCGTCTGGT CCGCGCCGGA CAACTCCGAG ATCTACCGGA CCCTCAAGCC CGCCGGTCAG
TGA
 
Protein sequence
MFLKAQRSRR RLAAVVLAAA LAAAGCGGSG GGGGTAADTL VVYTGQAGDW QLNFNPYSPT 
RIEGLGTIFE PLFFYNVTGS TDPVKRLGES FEWNADGTVL SITTRSGATW TDGKPFTAKD
VVFTLDMVAK TPTMNSVGYK GKAAAIDDTH LTVTFDEPSY LVGPQVLGRT WIVPEHLWGQ
LSDPATNVIA TPVGTGPFQL DEFKAQAFTL KANEGYHSGA PAVKKIRYLS LSGNQAGADA
LKAGQVDWQT GPVPDIANVE KNYPGYKANT TPMNQAALLT CSNAALGCEG PQTDPAVRKA
VYYALNRTQV NSLAFENTAS EISPGFALLG RDDAVISSKL AERTAPMQPD TAKAGQLLEG
AGYAKGGDGL YAKDGQQLAL NVKVVAGWTD YITALDTMTQ QLQQAGIKLN VQQSSWNEWA
DARGQGKYQL IIDSLYQGPA ADPFYLYSYF FATSSTAPVG QTATPNFARV SDPAIDAAID
ALKAIDPKDT AARQPHLDAI QTRVEETVPY IPLLTAGTTS EYNAKKFTGW PDESNPYAFF
AVWSAPDNSE IYRTLKPAGQ