Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Amir_6188 |
Symbol | |
ID | 8330399 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Actinosynnema mirum DSM 43827 |
Kingdom | Bacteria |
Replicon accession | NC_013093 |
Strand | - |
Start bp | 7252288 |
End bp | 7253970 |
Gene Length | 1683 bp |
Protein Length | 560 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 644946620 |
Product | extracellular solute-binding protein family 5 |
Protein accession | YP_003103839 |
Protein GI | 256380179 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.215725 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTTCCTGA AGGCACAGCG CTCACGCAGG CGGCTGGCGG CGGTGGTCCT CGCCGCGGCG TTGGCAGCGG CAGGCTGCGG CGGTTCCGGG GGCGGCGGCG GGACGGCCGC GGACACCCTC GTCGTCTACA CCGGCCAGGC GGGTGACTGG CAGCTCAACT TCAACCCGTA CTCGCCCACC CGCATCGAGG GCCTCGGCAC GATCTTCGAG CCGCTGTTCT TCTACAACGT CACCGGTTCC ACCGACCCCG TGAAGCGCCT CGGCGAGAGC TTCGAGTGGA ACGCCGACGG CACCGTGCTC TCCATCACCA CCCGCTCCGG GGCCACCTGG ACGGACGGGA AGCCGTTCAC CGCCAAGGAC GTCGTCTTCA CCCTGGACAT GGTCGCGAAG ACCCCGACCA TGAACAGCGT CGGCTACAAG GGCAAGGCCG CCGCGATCGA CGACACGCAC CTCACGGTCA CCTTCGACGA GCCCTCGTAC CTGGTCGGCC CGCAGGTCCT CGGCCGCACC TGGATCGTCC CCGAGCACCT GTGGGGCCAG CTCTCCGACC CGGCGACCAA CGTCATCGCC ACCCCCGTCG GCACCGGCCC GTTCCAGCTC GACGAGTTCA AGGCGCAGGC CTTCACCCTC AAGGCCAACG AGGGCTACCA CAGCGGCGCG CCCGCGGTGA AGAAGATCCG CTACCTCTCG CTGTCCGGCA ACCAGGCGGG CGCCGACGCG CTCAAGGCGG GCCAGGTCGA CTGGCAGACC GGCCCCGTCC CGGACATCGC GAACGTCGAG AAGAACTACC CCGGCTACAA GGCCAACACC ACCCCGATGA ACCAGGCCGC GCTGCTGACC TGCTCCAACG CCGCCCTGGG CTGCGAGGGC CCGCAGACCG ACCCGGCCGT GCGCAAGGCC GTCTACTACG CGCTCAACCG CACCCAGGTG AACTCGCTCG CGTTCGAGAA CACCGCCAGC GAGATCTCCC CCGGATTCGC GCTCCTCGGC CGCGACGACG CCGTCATCTC CAGCAAGCTC GCCGAGCGCA CCGCCCCCAT GCAGCCCGAC ACCGCCAAGG CCGGGCAGCT CCTCGAAGGC GCCGGCTACG CCAAGGGCGG CGACGGCCTC TACGCCAAGG ACGGCCAGCA GCTCGCCCTC AACGTCAAGG TCGTCGCGGG CTGGACCGAC TACATCACCG CCCTGGACAC CATGACCCAG CAGCTCCAGC AGGCGGGCAT CAAGCTCAAC GTGCAGCAGT CGTCCTGGAA CGAGTGGGCC GACGCGCGCG GCCAGGGCAA GTACCAGCTG ATCATCGACT CGCTCTACCA GGGCCCGGCC GCCGACCCGT TCTACCTCTA CAGCTACTTC TTCGCGACCT CCTCCACCGC GCCGGTCGGC CAGACCGCCA CCCCGAACTT CGCCCGCGTC TCCGACCCGG CCATCGACGC CGCGATCGAC GCGCTCAAGG CCATCGACCC CAAGGACACC GCCGCGCGCC AGCCGCACCT GGACGCCATC CAGACCCGCG TCGAGGAGAC CGTCCCCTAC ATCCCGCTGC TCACCGCGGG CACCACCAGC GAGTACAACG CGAAGAAGTT CACCGGCTGG CCCGACGAGT CCAACCCGTA CGCGTTCTTC GCCGTCTGGT CCGCGCCGGA CAACTCCGAG ATCTACCGGA CCCTCAAGCC CGCCGGTCAG TGA
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Protein sequence | MFLKAQRSRR RLAAVVLAAA LAAAGCGGSG GGGGTAADTL VVYTGQAGDW QLNFNPYSPT RIEGLGTIFE PLFFYNVTGS TDPVKRLGES FEWNADGTVL SITTRSGATW TDGKPFTAKD VVFTLDMVAK TPTMNSVGYK GKAAAIDDTH LTVTFDEPSY LVGPQVLGRT WIVPEHLWGQ LSDPATNVIA TPVGTGPFQL DEFKAQAFTL KANEGYHSGA PAVKKIRYLS LSGNQAGADA LKAGQVDWQT GPVPDIANVE KNYPGYKANT TPMNQAALLT CSNAALGCEG PQTDPAVRKA VYYALNRTQV NSLAFENTAS EISPGFALLG RDDAVISSKL AERTAPMQPD TAKAGQLLEG AGYAKGGDGL YAKDGQQLAL NVKVVAGWTD YITALDTMTQ QLQQAGIKLN VQQSSWNEWA DARGQGKYQL IIDSLYQGPA ADPFYLYSYF FATSSTAPVG QTATPNFARV SDPAIDAAID ALKAIDPKDT AARQPHLDAI QTRVEETVPY IPLLTAGTTS EYNAKKFTGW PDESNPYAFF AVWSAPDNSE IYRTLKPAGQ
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