Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Amir_6161 |
Symbol | |
ID | 8330371 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Actinosynnema mirum DSM 43827 |
Kingdom | Bacteria |
Replicon accession | NC_013093 |
Strand | + |
Start bp | 7216436 |
End bp | 7220716 |
Gene Length | 4281 bp |
Protein Length | 1426 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 644946594 |
Product | alpha-1,2-mannosidase |
Protein accession | YP_003103814 |
Protein GI | 256380154 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG3537] Putative alpha-1,2-mannosidase |
TIGRFAM ID | [TIGR01180] alpha-1,2-mannosidase, putative |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.241568 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGGGCACA TGCGGGGCAG GCGGAGATCA TTCGCGGGTG CGCTGGCGAT ATCCGTGGCG CTGGCGGGCG TGCCAGTCTG GGGGCAGGCC ACCGCCGCCC CCGAGGAGCC GCCCGTGCGC GAGACCGTCT TCGCCACCTC CTTCGAGGAG GGGCAACCGC TCCCCGACTG GGCGAGCACC GTGGAGACCG GACCGGACGG GAAGCCGAGG ACGGGCGGCG TCAACGGCAA CGACTCCACC GGCATCCCCG GCAACATCAC CGACCGCGTC ACCGCCGTCG CGGCCAACGC CGAGTACCCC GAGTCGGACG AGGTGAAGGA GAACCTGGTC GACGGGAGCC CCAGCAGCAA GTGGCTGGCG TTCACCGCGA CCGGCTGGCT GGAGTTCACC TTCGACGCGC CCGCGACCGT CGAGGACTAC GCCCTCACCT CGGCCAACGA CGCCCCCGAG CGCGACCCCA AGGACTGGAA GCTCAGCGGG TCCGACGACG GCGAGACCTG GACCGAGCTC GACGCCCGCA CCGGGCAGAC CTTCGCCGGG CGGCACACCA CGGTCACCTA CGAGACCGGC AACACCACCG CCTACCGGCA CTACCGGATC GACATCACCG CGAACCGGGG CGGCCAGGCC GTGCTCCAGC TCGCCGAGGT CACCTTCTCC GACGGCTCCA CCTCCCCGCC CGCCGAGCAC ATGCGCACCA CCACCGGCGA GGGCGCCACG GGGGCGTACA ACTCCCGCTC CCGCACCGGG TTCACCGGCA CGCGGGCGCT GCGCTACCAG GGCACGCACA CCGCCCAGGG GCGCGGCCAC TCGTACAACA AGGTGTTCGA GGTCGACTTC CCGGTCACCG CGACCACCGA GCTGTCCTAC CTGCTGTTCC CGTCGTTCAG CGCGGGCGAC CTGCGCTACC CGTCCACGTA CGCGGCGCTG GACGTGGCGT TCTCCGACGG CACCTACCTG AGCGAGCTGG GCGCGCGCGA CCAGCACGGG TTCGAGCTCT CGCCGAGGGG CCAGGGCGAG TCGAAGGCGC TGTCCACGAA CCAGTGGAAC CGGGTCGCGT CGGTGATCGG GCAGGTCGCG GCGGGCAAGA CCGCCAAGCG CATCCTGGTC GGCTACGACA ACCCGGCCGG TCCGGCCGCG TTCAACGGCT GGGTCGACGA CGTGGCCGTG CACACCGCGC CCGAGGTGGT GGAGCACGCC CGCCCGTCCG ACTGGGTGGT CACCACCAGG GGCACCAACT CCAGCGGCGG CTTCTCCAGG GGCAACAACT TCCCGGCCAC CGCCGTGCCG CAGGGCTTCA ACTTCTGGTC CCCGATGACG AACGCGGGGT CCACGAGCTG GATCTACGAG TACGCGAAGG CCAACAGCCG CACCACGAAC CTGCCGTCGC TGCAGGCGTT CACCGCCAGC CACCAGCCGA GCCCGTGGAT GGGCGACCGG CAGACGTTCC AGGTCATGCC GACCACCGGG ACGCCCACCG CCGACCGGGC GCTGCGCTCG CTGCCGTTCA AGCACTCCAA CGAGATCGCG CAGGCGCACT ACTACGGCGT GGCGTTCGAG AACGGCATGA GGACCGAGAT CGCGCCGACC GACCACGCGG CGGTGTTCCG GTTCACCTTC GTCGACGACG CCTCGAACCT GGTGTTCGAC AACGTCAGCA ACGAGGGCGG GCTGACGCTG GACGCCGAGA ACGGCGTGGT GAGCGGGTTC TCCGACGTGC GCAGCGGGTT GTCCGCGGGG GCGACGCGGC TGTTCGTGTA CGGGGAGGTG GACCGGCCGG TCACCGGCAG CGGGAAGCTC ACCGGGGCCG GGCGCGACAA CGTCGCCGGG TACCTGCGGT TCGACACCTC CGCCGAGAAG ACCGTGACGC TGCGGATCGC GACCTCGCTG CTGGGCGTGG AGCAGGCCAG GAAGAACCTG GACCTGGAGG TGTCCACTTC GGACACGTTC GAGTCGGTGC GCGACCGGGC GCAGGGCGCG TGGGACGACA TCCTCGGCAA GGTCAAGGTC GAAGGCGCGA GCCAGGACCA GCTGACCACG CTGTACTCCA ACCTGTACCG GCTGTACCTG TACCCGAACT CCGGCTTCGA GAACACCGGG ACGGCGGCCG AGCCGAGGCA CCAGTACGCG AGCCCGGTGC GCGCGGGCGG GGCGAGCACG CCGACGCGGA CCGGCGCGCA GGTCGTCGAC GGGAAGGTGT ACGTCAACAA CGGGTTCTGG GACACCTACC GGACCACCTG GCCCGCGTAC AGCCTGCTGA CGCCGGAGAA GGCCGGTGAG ATGGTCGACG GGTTCGTCGA GCAGTACCGG GACGGCGGCT GGATCTCCCG CTGGTCCTCC CCCGGCTACG CGAACCTGAT GACCGGCACC AGCTCCGACG TGGCGTTCGC GGACGCGTAC CTGAAGGGCG TCGGCGGGTT CGACGCGGAG GCGGCGTTCG CGGCGGCGGT GAAGAACGCG ACGGTGACCC CGCCGAACGC GAGCGTGGGC CGCAAGGGGC TCGACACCTC GGTGTTCAAG GGCTACACGT CCACCGCCAC CGGCGAGGGC ATGTCGTGGG CGCTGGAGGG CTACGTCAAC GACTACGGCA TCGCCACCAT GGCCAAGGCG CTGCACGAGT CGACCGGCAA GGCGGAGTAC CTGGAGCAGC ACGAGTACTT CCGCGAGCGC GCGCTGAACT ACGTGAACAT GTTCGACCCG TCGGTCGGGT TCTTCCAGGG CCGCAAGCCG GACGGCGCGT GGCGGCTGCC CGCCGGGCAG TACGACCCCG AGGTGTGGGG GCACGACTAC ACCGAGACCA ACGGCTGGAA CATGGCGTTC ACCGTGCCGC ACGACGGGCA GGGGCTCGCG AACCTGCACG GCGGCAAGGA GGGGTTGGCG AAGAAGCTGG ACCAGTTCTT CGCGACGCCC GAGACGGCCA CGAAGGTCGG GTCGTACGGC GGGGTCATCC ACGAGATGCT CGAAGCGCGG GACGTGCGGA TGGGGCAGTA CGGGCACAGC AACCAGCCCT CGCACCACAT CCCCTACATG TACGACTACG TCGGGCAGCC GTGGAAGACC CAGGAGAAGG TGCGGGAGGT CCTGTCGCGG CTGTACCTGG GCAGCGAGAT CGGCCAGGGC TACCCCGGCG ACGAGGACAA CGGCGAGCAG TCGGCGTGGT GGCTGTTCAG CGCGCTGGGG TTCTACCCGC TGCAGATGGG CAGCGCGAGC TACGCGGTGG GGTCGCCGCT GTTCACCAAG GCCACCGTGG ACCTGGGCGG CGGTCGCGAG TTCGTGGTGA ACGCGCCGGG CAACAGCGCG TCGAACGTCT ACGTGCAGTC GTTGAAGGTC AACGGGAAGG CGTGGGACAA GGCGCACCTG CCGCACTCGG TGCTCGCGGA CGGGGCGGTG CTGGACTTCG AGATGGGCGC GGCGCCGTCG ACGTGGGCCA GCGGCGCGGA CGCCGCTCCG CCGTCGCTGA CCACGGGCCC GGCGGTGCCG ACACCGCTGC GGGACGTGGT GACGGCCGCG TCGACGACCG CGTCCGGTCC GGTGGGGCCG CTGGTGGACG ACACGTCGGC GACCGAGTCG GCGGTGTCGT GGGTGCAGGT CGCGGCGCCG GACCGGCGGG AGAAGGCGGA GTTCTACACG CTGACGTCGG GAAGGGCGGC GGGCGCCGAT CCCGGTTCGT GGGTGCTGAA GGGCTCGTAC GACGGGAAGA CGTGGGTCGC GGTGGACGAG CGGTCCGGTC AGGAGTTCGT GGACCGGAAG CAGACGCGGG CGTTCAAGAT CGCGCGGCCG GGGCACTACC GGCACTACCG GCTGGAGCTG TCGGGGTCGG CCGCGCTGGC GGAGTTCGAG CTGCTGGCGA AGCCGTTCGC CACCTGCGAC CGGGTGGTGT CCGGTGAGCA CGCGGGCCCG CTGACGGTCG GTTCGGGGAC GGTGTGCCTG ACCGGCGCGG TGGTGTCGGG GCCGGTCACG GTCGGGTCGG GCGCGGCGCT GTACTCGTTC GACTCGGTGG TGCGCGGTCC GGTGTCGGCG GCGGGCGCGT CGGCGGTGGT GCTGGTGGAG ACCGAGGTGG CCGGTCCGGT GTCGGTGACC GGGACGACCG GCGAGGTCTC GCTGGAGCTG GCGCGCGTGT CCGGGCCGGT GAGCGTGGTG GGCAACCGGG GCGGGACGCT GCTGGCGGGC AACGCCGTGG GCGGTCCCCT GTCGTGCACG GCGGGCGACC CGGCCCCGGT GGACCACGGC TGGCCGAACG AGGTGCGGGG CCCGAAGTCG GGGCAGTGCA CGGGGTTGTA G
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Protein sequence | MGHMRGRRRS FAGALAISVA LAGVPVWGQA TAAPEEPPVR ETVFATSFEE GQPLPDWAST VETGPDGKPR TGGVNGNDST GIPGNITDRV TAVAANAEYP ESDEVKENLV DGSPSSKWLA FTATGWLEFT FDAPATVEDY ALTSANDAPE RDPKDWKLSG SDDGETWTEL DARTGQTFAG RHTTVTYETG NTTAYRHYRI DITANRGGQA VLQLAEVTFS DGSTSPPAEH MRTTTGEGAT GAYNSRSRTG FTGTRALRYQ GTHTAQGRGH SYNKVFEVDF PVTATTELSY LLFPSFSAGD LRYPSTYAAL DVAFSDGTYL SELGARDQHG FELSPRGQGE SKALSTNQWN RVASVIGQVA AGKTAKRILV GYDNPAGPAA FNGWVDDVAV HTAPEVVEHA RPSDWVVTTR GTNSSGGFSR GNNFPATAVP QGFNFWSPMT NAGSTSWIYE YAKANSRTTN LPSLQAFTAS HQPSPWMGDR QTFQVMPTTG TPTADRALRS LPFKHSNEIA QAHYYGVAFE NGMRTEIAPT DHAAVFRFTF VDDASNLVFD NVSNEGGLTL DAENGVVSGF SDVRSGLSAG ATRLFVYGEV DRPVTGSGKL TGAGRDNVAG YLRFDTSAEK TVTLRIATSL LGVEQARKNL DLEVSTSDTF ESVRDRAQGA WDDILGKVKV EGASQDQLTT LYSNLYRLYL YPNSGFENTG TAAEPRHQYA SPVRAGGAST PTRTGAQVVD GKVYVNNGFW DTYRTTWPAY SLLTPEKAGE MVDGFVEQYR DGGWISRWSS PGYANLMTGT SSDVAFADAY LKGVGGFDAE AAFAAAVKNA TVTPPNASVG RKGLDTSVFK GYTSTATGEG MSWALEGYVN DYGIATMAKA LHESTGKAEY LEQHEYFRER ALNYVNMFDP SVGFFQGRKP DGAWRLPAGQ YDPEVWGHDY TETNGWNMAF TVPHDGQGLA NLHGGKEGLA KKLDQFFATP ETATKVGSYG GVIHEMLEAR DVRMGQYGHS NQPSHHIPYM YDYVGQPWKT QEKVREVLSR LYLGSEIGQG YPGDEDNGEQ SAWWLFSALG FYPLQMGSAS YAVGSPLFTK ATVDLGGGRE FVVNAPGNSA SNVYVQSLKV NGKAWDKAHL PHSVLADGAV LDFEMGAAPS TWASGADAAP PSLTTGPAVP TPLRDVVTAA STTASGPVGP LVDDTSATES AVSWVQVAAP DRREKAEFYT LTSGRAAGAD PGSWVLKGSY DGKTWVAVDE RSGQEFVDRK QTRAFKIARP GHYRHYRLEL SGSAALAEFE LLAKPFATCD RVVSGEHAGP LTVGSGTVCL TGAVVSGPVT VGSGAALYSF DSVVRGPVSA AGASAVVLVE TEVAGPVSVT GTTGEVSLEL ARVSGPVSVV GNRGGTLLAG NAVGGPLSCT AGDPAPVDHG WPNEVRGPKS GQCTGL
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