Gene Amir_6118 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAmir_6118 
Symbol 
ID8330328 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameActinosynnema mirum DSM 43827 
KingdomBacteria 
Replicon accessionNC_013093 
Strand
Start bp7174636 
End bp7176324 
Gene Length1689 bp 
Protein Length562 aa 
Translation table11 
GC content70% 
IMG OID644946551 
ProductSSS sodium solute transporter superfamily 
Protein accessionYP_003103771 
Protein GI256380111 
COG category[E] Amino acid transport and metabolism
[R] General function prediction only 
COG ID[COG0591] Na+/proline symporter 
TIGRFAM ID[TIGR00813] transporter, SSS family
[TIGR01593] toxin secretion/phage lysis holin 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGCCCGTGC TCGCTGCGGA AGCTGATCTT CGCCTGGACG CGGGGGCGTT GGACTACGCC 
CTGCTCGCCC TCTACTTCGT CGTGGTCCTC GGGATCGGGT TCCTCGCCCG CCGGTCCGTG
TCCACGAGCC TGGACTTCCT GCTGTCCGGG CGCTCCCTGC CCGCCTGGGT TACCGGCCTG
GCGTTCGTGT CCGCCAACCT CGGCGCGATC GAGCTGCTCG GCATGGCCGC CAACGGCGCC
CAGTACGGCA TGGCGACCAT GCACTACTAC TGGGTCGGCG CCATCCCGGC GATGGTGTTC
CTCGGCCTGG TGATGATGCC GTTCTACTAC GGCTCCAAGG TCCGCAGCGT CCCCGAGTTC
CTGCGCCGCC GGTTCGGCAA GGGCGCGCAC CTGGTCAACG CGATCAGCTT CGCCGTCGCC
CAGGTCCTCA TCGCGGGCGT GAACCTGTAC GCGCTGGCCC TGCTGCTGAA CCTGCTGCTC
GGCTGGCCCA TCCCGCTGTC CGTGGTGATC GCGGCCCTGA TCGTGCTGGC CTACACCACC
CTCGGCGGGC TCTCGGCCGC GATCTACAAC GAGGTCCTCC AGTTCTTCGT GATCATCGCC
GCGCTGCTGC CGCTCACCAT CGCGGGCCTG CACAAGGTCG GCGGGTGGCA GGGCCTGGTC
GACAAGGTCA CCGCCGGCCC CGGCGGCGAG GAGCAGCTGT CCGCGTACCC GGCGACCGAG
CTGACCGGGT TCGAGAACCC GGTGCTGAGC GTCATCGGCA TCGTGTTCGG CCTCGGGTTC
GTGCTGTCCT TCGGCTACTG GACGACGAAC TTCGCCGAGG TGCAGCGCGC CCTGTCCGCC
AAGAGCATGT CGGCGGCCAA GCGCACCCCG ATCATCGGCG CCTACCCGAA GGCGCTGATC
CCGGCCGTGA TCGTCATCCC CGGCATCATC GCCGCCGTCG TCGTGCCCGA GATGAGCGCG
CTCAAGGCGG GCGAGGCGGC GGACGGCGTC ACCTACAACA ACGCGCTGCC GCTGCTCATG
CGCGACCTGC TGCCCAACGG GATGCTCGGC GTCGCCATCA CCGGCCTGCT CGCCTCGTTC
ATGGCGGGCG TCGCGGCGAA CGTGTCCTCG TTCAACACGG TGTTCACCTA CGACCTGTGG
CAGGACTACG TCCGCAAGGA CCGGCCCGAC GGCTACTACC TGAAGGTGGG GCGCTGGGCC
ACGATCGGCG GCACGGTCAT CGCCATCGGC ACCGCGTTCC TGGCGGCGGG CTACGGGAAC
ATCATGGACT ACATCCAGTC CCTGTTCTCG TTCTTCAACG CCCCGCTGTT CGCCACGTTC
ATCCTCGGCA TGTTCTGGAA GCGGATGTCC GCCGCCGCGG GCTGGACCGG CCTGGTCGCG
GGCACGCTCG CGGCCGTGCT GGTGTTCGCG CTCGCCGAGA CCGGGGTGCT CGACCTGCCC
GGCCAGGGCG CGAGCTTCCT GGGCGCCGCC GCCGCGTTCG TGGTGGACAT CGTGGTCAGC
GTGGTCGTCA CCCTGTTCAC CAGGCCGGTG CCGCGGGAGC GGCTGTCGGG GCTGGTCTAC
GGGCTCACGC CCAAGGGCGA CCTCGCGCAC GGCACGGAGG GCGAGGACGC CGGCTGGTAC
CGGTCGCCCG CGCTGCTCGG CGGTGGGGTG CTGCTGCTGA CCGCCGTGCT CAACATCGTT
TTCAGCTGA
 
Protein sequence
MPVLAAEADL RLDAGALDYA LLALYFVVVL GIGFLARRSV STSLDFLLSG RSLPAWVTGL 
AFVSANLGAI ELLGMAANGA QYGMATMHYY WVGAIPAMVF LGLVMMPFYY GSKVRSVPEF
LRRRFGKGAH LVNAISFAVA QVLIAGVNLY ALALLLNLLL GWPIPLSVVI AALIVLAYTT
LGGLSAAIYN EVLQFFVIIA ALLPLTIAGL HKVGGWQGLV DKVTAGPGGE EQLSAYPATE
LTGFENPVLS VIGIVFGLGF VLSFGYWTTN FAEVQRALSA KSMSAAKRTP IIGAYPKALI
PAVIVIPGII AAVVVPEMSA LKAGEAADGV TYNNALPLLM RDLLPNGMLG VAITGLLASF
MAGVAANVSS FNTVFTYDLW QDYVRKDRPD GYYLKVGRWA TIGGTVIAIG TAFLAAGYGN
IMDYIQSLFS FFNAPLFATF ILGMFWKRMS AAAGWTGLVA GTLAAVLVFA LAETGVLDLP
GQGASFLGAA AAFVVDIVVS VVVTLFTRPV PRERLSGLVY GLTPKGDLAH GTEGEDAGWY
RSPALLGGGV LLLTAVLNIV FS