Gene Amir_6072 details

Gene Information

• Locus tag: Amir_6072
• ID: 8330282
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Actinosynnema mirum DSM 43827
• Kingdom: Bacteria
• Replicon accession: NC_013093
• Strand: +
• Start bp: 7127911
• End bp: 7129890
• Gene Length: 1980 bp
• Protein Length: 659 aa
• Translation table: 11
• GC content: 72%
• IMG OID: 644946505
• Product: alpha amylase catalytic region
• Protein accession: YP_003103725
• Protein GI: 256380065
• COG category: [G] Carbohydrate transport and metabolism
• COG ID: [COG0366] Glycosidases

Plasmid Coverage information

• Num covering plasmid clones: 17
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGCGGAC GACTCGGTGT CGACGACGTC TCCCCAGCGG TGAGCTGCGG GCGCTACCCG 
GCGAAGGCCG TGGTCGGCGA GCACGTCCCG GTCCGGGCCA CGGTGTGGCG CGAGGGCCAC 
GACGCCGTGG CGGCCACCGT CGTGTGGCGC GGTCCCGAGG ACCGCGTCGC CAGGCAGACC 
AGGATGTCCC CCGAGGGGAT CGGCCTGGAC CGCTGGGCGG CCGTGATCGC GCCCGACACC 
ACCGGGGCCT GGACCTTCCG CGTCGACGCC TGGAGCGACC CGTGGTCGAC CTGGCTGCAC 
GCGGTGGAGG TCAAGGTCGC CGCGGGGCAG GGCGCCGACG AGCTGGCGAA CGACCTGGAG 
ACCGGCGCGC GGCTGCTCGA CCGGGTCTCC CGCAGGCCGG ACCGGCGCCG CGAGAAGCCG 
CTGCTGTCCA ACGCCGCCGC CGCGCTGCGC GACGAGGGCA GGCCGCTGAC CGAGCGGGTC 
GCCCCGGCGC TGGCCGCCGA CGTGCGGCGG GTCATGCACG AGCACCCGGT GCGGGAGCTG 
GTCACCAAGG GCAAGCAGCA CCGCGTCTGG GTGGACCGGG AGCGGGCCGC GTTCGGCTCC 
TGGTACGAGT TCTTCCCCCG CTCCACCGGC GGCGTCGACG AGTCCGGCGT CCCCGTGCAC 
GGCACGTTCG TGACCGCCGC GCGCGAGCTG GACCGGGTGG CCGCGATGGG CTTCGACGTG 
GTGTACCTGC CGCCGATCCA CCCGATCGGC CGGGTCAACC GCAAGGGCCC CAACAACACG 
CTGACCGCGA CCGAGGACGA CTGCGGCTCG CCGTGGGCGA TCGGCTCGGA CGAGGGCGGG 
CACGACGCGA TCCACCCGGA GCTGGGCACG GAGGCCGACT TCGCGGCGTT CGTGAAGCGC 
GCCGCCGAGC TGGACATGGA GGTCGCGCTC GACCTCGCGC TCCAGGCCGC GCCGGACCAC 
CCGTGGGTGC TCAAGCACCC GGAGTGGTTC ACCACCCGCC CGGACGGCAC GATCGCGTAC 
GCGGAGAACC CGCCGAAGAA GTACCAGGAC ATCTACCCGG TCAACTTCGA CAACGACCCG 
CAGGGCATCT ACAACGAGGT GCTCCGGGTC GTGCTGCACT GGGTCGACCT GGGGGTGAAG 
GTCTTCCGGG TCGACAACCC GCACACCAAG CCTCCGGACT TCTGGGCGTG GCTGATCTGG 
ACCGTGAAGG ACCGGCACCC GGACGTGCTG TTCCTGGCCG AGGCGTTCAC CCGCCCGGCG 
CGGCTGTACG GGCTGGCCAA GCTCGGGTTC ACCCAGTCGT ACACCTACTT CACCTGGCGC 
ACCTCGAAGG AGGAGCTGAC CGAGTTCGCG CTGGACCACC TCGCGCACTG GGACGAGGCC 
AGGCCGAACC TGTTCGTCAA CACCCCGGAC ATCCTCCACG AGTCGCTCCA GCACGGCGGC 
CCCGGCACGT TCGCGCTGCG CGCGGCGCTG GCCGCCACGC TGTCGCCGAC CTGGGGGGTG 
TACTCCGGCT ACGAGCTGTT CGAGCACCAG GCGCTCAAGC CGGGCAGCGA GGAGTACCTG 
AACACGGAGA AGTTCCAGCT CCGGCCGCGC GACTACGCGG CGGCGGTGGC CGAGGGCCGC 
TCGCTGGAAC CATGGCTGCG CAAGCTGAAC GGCATCAGGC GGGCGCACCC GGCGCTGCGC 
CAGATGCGGA CGCTGCGCTT CCACGAAGTC GACAACCCGG CCCTGATCGC CTACTCCAAG 
CAGGACCCGG CCACCGGTGA CACGATCGTC GTGGTGGTCA GCCTCGACCC GAACGGGTCG 
CAGGAGGGGA CCATCCGGCT CGACCTGCCC GCTCTCGGCA TCGACTGGCA CGAGCGCCTC 
ATCGCGCACG ACGAGGTCAC CGGCGAGACG TGGGACTGGG GTCAGGCCAA CTACGTGAAG 
CTCGAACCCT GGCGGGCGAC GGCGCACATC GTCGCCGTGC AGCGCAGGTT CGCGGGCTAG 

 

Protein sequence

MSGRLGVDDV SPAVSCGRYP AKAVVGEHVP VRATVWREGH DAVAATVVWR GPEDRVARQT 
RMSPEGIGLD RWAAVIAPDT TGAWTFRVDA WSDPWSTWLH AVEVKVAAGQ GADELANDLE 
TGARLLDRVS RRPDRRREKP LLSNAAAALR DEGRPLTERV APALAADVRR VMHEHPVREL 
VTKGKQHRVW VDRERAAFGS WYEFFPRSTG GVDESGVPVH GTFVTAAREL DRVAAMGFDV 
VYLPPIHPIG RVNRKGPNNT LTATEDDCGS PWAIGSDEGG HDAIHPELGT EADFAAFVKR 
AAELDMEVAL DLALQAAPDH PWVLKHPEWF TTRPDGTIAY AENPPKKYQD IYPVNFDNDP 
QGIYNEVLRV VLHWVDLGVK VFRVDNPHTK PPDFWAWLIW TVKDRHPDVL FLAEAFTRPA 
RLYGLAKLGF TQSYTYFTWR TSKEELTEFA LDHLAHWDEA RPNLFVNTPD ILHESLQHGG 
PGTFALRAAL AATLSPTWGV YSGYELFEHQ ALKPGSEEYL NTEKFQLRPR DYAAAVAEGR 
SLEPWLRKLN GIRRAHPALR QMRTLRFHEV DNPALIAYSK QDPATGDTIV VVVSLDPNGS 
QEGTIRLDLP ALGIDWHERL IAHDEVTGET WDWGQANYVK LEPWRATAHI VAVQRRFAG