Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Amir_6030 |
Symbol | |
ID | 8330240 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Actinosynnema mirum DSM 43827 |
Kingdom | Bacteria |
Replicon accession | NC_013093 |
Strand | - |
Start bp | 7080370 |
End bp | 7083012 |
Gene Length | 2643 bp |
Protein Length | 880 aa |
Translation table | 11 |
GC content | 77% |
IMG OID | 644946463 |
Product | TPR repeat-containing protein |
Protein accession | YP_003103683 |
Protein GI | 256380023 |
COG category | [S] Function unknown |
COG ID | [COG4995] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGGCAGTGG CCGTGCACAC ACCCGGTCTC AGACCTCGCG GAACGCGCGG GCCCACCGGA CCGGACAACG CGATCGAACT CGCCAGGGAA CTCCACCGCA GCGCGCTGGA GGCGGCGACC GCCGACCGGC ACCCGCTCGC CATCCGGCAG ATGCGCGAGG GGCTCGCCCT GCTGGAGACC GGGGGCATCG CCCCCCAGGA CCGCCTGGAG GTCCGCGCCA GGCTCATGAG CACCCTGGCC TTCTGCCTCG CCGAGACCGG CAACGTCGAG CGGGGCCTCA CCCAGCTCGC CGCGGTCGAG GCCGAGCTGG GCGGCCTGAC CGACGAGGGC CTGCGCGACG GCCTCGCCAT CGTCGTCGCC GTCAACCAGG CCGCGCTGCT GTGCCGGGTC GGCCGGATCG AGGAGGGCGT CGCCCGGCTC GACGTGGCCG TCGAGCGCAG CGAGCGCGTC CTCGTCGAGA AGCCCGACGC GGTCGAGCAG CTCGTCGTCG CGCTGACCAA CCGGGGCAAC GCGCACGGCG AGGCCCAGGA CTACCACCGG GCGGCCAGGG ACCTGGACCG CGCCGTGGAG CTGGCCGACG CGCACGACCT GCCGACGCGC TCGGCCATCG CCAAGCACGC CCTCGGCAAC TCGCTCCAGC GCGCGGGCGA CACCCCGGCC GCGCTGCGCC ACTACCACGA CGCGGCGCTC GCGTTCCAGA GGCTGGAGCC CGGCCTGCTG CTGCGGCTGC GCATCGACCA GGCCGAGGCG CTCATCGGCG TCGGCCTGGC CGACGAGGCG GGCAGGCTGC TCGACGAGGT GCTGCCCGAG CTGCGCCGCC AGCGCATCGG GCAGGACGTC GCCGAGGCCG AGCTGTTCCG CGCCGCCGCC GCCCTCCAGG ACGGCGACCT CGTGCTCGCC AAGCGGATGG CCAAGGCCGC GCAGCGCAAG CTGCTGCGGC GCGGCAGCCC GGCGTGGGCG GGTGTCGCGG GCCTGCTGGC GCTGCGGGTG GACGTCCAGC GGGCGCTCCA GGCCCCCCGC CGCCCGCCCG AGCAGCTGGT GCGCAGGGCC ATCGCGCTGT CCGCCGAGCT GACCGCGCTG CGGCTGGTCG AGCAGGCCGC GCTCGCGCTC GTGCTGTCGG CCAGGCTGGA GATCCGCAGG GGCGCGCCCG ACCGGGCCGA CGGGCTGCTG CGCGGGGTCG TCCGGTCGCA CAAGTTCGTC GCCATCGACC TGCGGATGCT GCTGCGGCTG TGCCGGGCGG AGCTGGCGCT GGCGCGCGGC AACCGGCGCG TCGCGCTCGC CCAGGCCAAG GCCGGGCTGG ATGAGCTGGG CCGGATGCGC GACCGGCTCG GCGGGCTGGA GATGATGTCC GGCACCGCCG TGCACGGCCT CGAACTGGGC GAGCTGGCCG TGCGGCTGGC GCTGGAGGGC GCGGGCTCGG CCGAGGGCGC GCAGCGGTTG TTCACCTGGT TGGAGCGCAC CAAGGCCCAG CTGTACCGCT ACGACCCGGT CGAGACGCCC GAGGACGACG GGCTCACCGA GCGGGTCACC GAGGTCCGCA GGCTCACCGG CGCGCTGCTG CGCGCCCGCC TCGACGGGCA GTCCACCGGG GCCCTGGAGG AGCGGCTGCG GCTGGCCAAG CACGCGGCCA CCCGGCTCGG CTGGGGAGCG GCCCCGTGGG GCACGCCCCG GCCGGTGGTC ACCGCCGCCG AGGTCGCCGC CGCGCTCGGC GACCGGACGC TGGTCAGCTA CGCGGTGTCC GACGACGAGC TCGTCGCCGT CGTGCTGGTC GACGGCCTGG TGCGGCTGGT CCGGCTCGGA CCAGCCGGGG TCGTCGCCGA GAGCGCGCGC AGGCTGCACG CCGACCTGAA CGCGCTGGCC CCCGACCACC TGCCCGCGCC GCTGGTCGAG GTGATCTCCG CGTCGGCCAG GCGGCAGGCC GAGGTGCTGG ACCAGGCGCT GCTCCGCCCG CTCGCCGCCA TGCTCGGCGG GCGGGAGCTG GTCGTGGTGC CCACCGGGGC GCTGCACGCG GTGCCGTGGG GCGTGCTGCC CACCTGCGCG GGCAGGCCGA CCTCGGTGGT GCCGTCGGCG ACGGCCTGGG TGTCCGCGCT GGGCAGCGGC CAGGACGACC CGGACGGGGT GCTGCTGGTG CGCGGGCCCG GCCTGCAGGC GGCGCAGACC GAGCTGGACC GGCTGGCCGG CTACCACGAC CGGCCCACCG TGCTGGACGT GCCGCAGGCC AAGGTCGGCG CGGTGCTGAC CGCGCTGGCC GGGCAGGGGC TGGCGCACAT CGCCGCGCAC GGCGAGCACG AGCCGGAGAA CGCGCTGTTC TCCCGGCTGG AGCTGACCGA CGGCGCGGTG TTCGCCTACG AGATCGGCCG GGTGCGGCAG CTGCCCACCA AGGTCGTGCT GTCCGCGTGC GAGCTGGCGC TCAACCGGGT GCGGCCCGGC GACGAGCCGC TCGGGTTCGC CGGTGCGCTG CTCGCGGGCG GGGTGCGGAC GGTGATCGCG GCGTCCAGCA AGGTCGGCGA CGAGCCGTCC GCGCTGGCGA TGGAGGTGTT CCACCGGGAG CTGCTCGCGG GGGAGAGCCC GGCGCTGGCG CTGGCGCGCG CGGTCGCCGA GGACCCGCTG CGAAGACCCT TCGTGTGCCT GGGGGCCGGC TAG
|
Protein sequence | MAVAVHTPGL RPRGTRGPTG PDNAIELARE LHRSALEAAT ADRHPLAIRQ MREGLALLET GGIAPQDRLE VRARLMSTLA FCLAETGNVE RGLTQLAAVE AELGGLTDEG LRDGLAIVVA VNQAALLCRV GRIEEGVARL DVAVERSERV LVEKPDAVEQ LVVALTNRGN AHGEAQDYHR AARDLDRAVE LADAHDLPTR SAIAKHALGN SLQRAGDTPA ALRHYHDAAL AFQRLEPGLL LRLRIDQAEA LIGVGLADEA GRLLDEVLPE LRRQRIGQDV AEAELFRAAA ALQDGDLVLA KRMAKAAQRK LLRRGSPAWA GVAGLLALRV DVQRALQAPR RPPEQLVRRA IALSAELTAL RLVEQAALAL VLSARLEIRR GAPDRADGLL RGVVRSHKFV AIDLRMLLRL CRAELALARG NRRVALAQAK AGLDELGRMR DRLGGLEMMS GTAVHGLELG ELAVRLALEG AGSAEGAQRL FTWLERTKAQ LYRYDPVETP EDDGLTERVT EVRRLTGALL RARLDGQSTG ALEERLRLAK HAATRLGWGA APWGTPRPVV TAAEVAAALG DRTLVSYAVS DDELVAVVLV DGLVRLVRLG PAGVVAESAR RLHADLNALA PDHLPAPLVE VISASARRQA EVLDQALLRP LAAMLGGREL VVVPTGALHA VPWGVLPTCA GRPTSVVPSA TAWVSALGSG QDDPDGVLLV RGPGLQAAQT ELDRLAGYHD RPTVLDVPQA KVGAVLTALA GQGLAHIAAH GEHEPENALF SRLELTDGAV FAYEIGRVRQ LPTKVVLSAC ELALNRVRPG DEPLGFAGAL LAGGVRTVIA ASSKVGDEPS ALAMEVFHRE LLAGESPALA LARAVAEDPL RRPFVCLGAG
|
| |