Gene Amir_5982 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAmir_5982 
Symbol 
ID8330189 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameActinosynnema mirum DSM 43827 
KingdomBacteria 
Replicon accessionNC_013093 
Strand- 
Start bp7028478 
End bp7029152 
Gene Length675 bp 
Protein Length224 aa 
Translation table11 
GC content71% 
IMG OID644946412 
ProductUracil-DNA glycosylase superfamily 
Protein accessionYP_003103635 
Protein GI256379975 
COG category[L] Replication, recombination and repair 
COG ID[COG0692] Uracil DNA glycosylase 
TIGRFAM ID[TIGR00628] uracil-DNA glycosylase 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.569392 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGGGACGTC CTTTGGAAGA AGTCGTCGAA GAGGGCTGGG CGCGGGCACT CGCGCCGGTG 
GCCGACCAGA TCAGCAAGAT GGGGGATTTC CTCCGGGATG AGGTCGCCGC GGGGCGCACC 
TACCTGCCCG CGGGGGAGAA CGTGCTGCGG GCGTTCAAGC AGCCGTTCGA CGGCGTGCGC 
GTGCTGATCG TGGGTCAGGA CCCGTACCCG ACACCGGGGC ACGCGGTGGG CCTGAGCTTC 
TCGGTCTCGC CGGAGACCCG GCCCATCCCC AAGAGCCTGC AGAACATCTT CGCGGAGCTG 
GGCGCCGACC TCGGGCACCC GATGCCGTCC AACGGCGACC TGACGCCGTG GACCGAGCAG 
GGCGTGCTGC TGCTCAACAG GGTGCTCACG GTCCGGCCGC GCAACTCCAA CTCCCACCAG 
AACAAGGGCT GGGAGAAGGT GACCGAGCAG GCGGTGCGCG CGCTGGCCGC GCGCGGTGTG 
CCGCTGGTGG GCCTGCTGTG GGGCCGCAAC GCCCGCAACC TCCGGCCGCT GCTGGAGCCT 
TACCCGTGCG TGGAGGGCGT GCACCCGAGC CCGATGTCCG CCGCGGGCGG GTTCTTCGGC 
TCGAAGCCGT TCAGCCAGGT GAACGCGCTG CTGGAGCAGC AGGGCGCCGA GCCGGTGGAC 
TGGAAGCTGC CGTAA
 
Protein sequence
MGRPLEEVVE EGWARALAPV ADQISKMGDF LRDEVAAGRT YLPAGENVLR AFKQPFDGVR 
VLIVGQDPYP TPGHAVGLSF SVSPETRPIP KSLQNIFAEL GADLGHPMPS NGDLTPWTEQ 
GVLLLNRVLT VRPRNSNSHQ NKGWEKVTEQ AVRALAARGV PLVGLLWGRN ARNLRPLLEP 
YPCVEGVHPS PMSAAGGFFG SKPFSQVNAL LEQQGAEPVD WKLP