| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_5980 |
|---|
| Symbol | |
|---|
| ID | 8330187 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Actinosynnema mirum DSM 43827 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013093 |
|---|
| Strand | - |
|---|
| Start bp | 7026929 |
|---|
| End bp | 7027807 |
|---|
| Gene Length | 879 bp |
|---|
| Protein Length | 292 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 76% |
|---|
| IMG OID | 644946410 |
|---|
| Product | NAD-dependent epimerase/dehydratase |
|---|
| Protein accession | YP_003103633 |
|---|
| Protein GI | 256379973 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0451] Nucleoside-diphosphate-sugar epimerases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.853501 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAAGATCC TCGTCATCGG CGCCACCGGC TACGTCGGCA GCCGCCTCGC CCCCGCCCTG
CGCCGCGCGG GCCACACCGT CCTCGGCCTG ACCAGGGACC CCGCCTCGCC AAGGGCCCGC
GCGCTCGCCG CAGCCGAGGT GATCCCCGTC GCGGGCGAGC TCGGCGACCC GGCGAGCTAC
CGGGCGCACC TGGCGGGCGT CGACGCCGTC GTGCACCTGG CGATGGACCT CGGCGACCCG
GCCGGTTCGG ACCGCGCCCT GTTCGCCGAG CTGCTCGACG CCGGCTCCCC GCACCTGGTC
TACACCACCG GCTGCTCCAG CTACGGCCGC GTCGACGCCC CCGTGCTCGA CGAGACCACC
CCCGGCAACC CGGACAGCCC GCTGGCCTTC CGCTTCGCCC TGGAGCGCGA GCTGGCCGCG
ACCGGCCTGC CGCACACCGT CCTGCGTCCC GGCTTCGTCT ACGGCGGCGA CGCCCGGACC
TCCCAGAGCG GCAACTGGTT CGCGGCGGGC CGCGACGGCC GCGCGGTGTT CTTCGGCGAC
CGCGCCAGGT CGTGGACCTG GGTGCACGTG GACGACCTGG TCGACGCCTG CACCGCCGCC
GTCGACCTCC TGGCCGAGGT GGACGGCGAG GTGTTCTGCG TCGGCGAGGA GGACGCCCCG
ACCGCGCTGG AGGTCTTCAC CGCGTGCGTG CGCGCCGCGG GCCACACCGG ACCGGTCGAG
TTCGCGCCGA TCACCGAGGC CGGTTGGCTC GACCAGGCCG CCGACCAGGA CGAGGTGATG
ACCAGCGCCA AGGCCCGCAG GCTCCTCGGC TGGACGCCGC GCCGCACCGG CGTCCTGGCC
GACGTGGACA CCTACTTCAC CGCGTGGGCG TCGGCGTGA
|
|---|
| Protein sequence | MKILVIGATG YVGSRLAPAL RRAGHTVLGL TRDPASPRAR ALAAAEVIPV AGELGDPASY
RAHLAGVDAV VHLAMDLGDP AGSDRALFAE LLDAGSPHLV YTTGCSSYGR VDAPVLDETT
PGNPDSPLAF RFALERELAA TGLPHTVLRP GFVYGGDART SQSGNWFAAG RDGRAVFFGD
RARSWTWVHV DDLVDACTAA VDLLAEVDGE VFCVGEEDAP TALEVFTACV RAAGHTGPVE
FAPITEAGWL DQAADQDEVM TSAKARRLLG WTPRRTGVLA DVDTYFTAWA SA
|
|---|
| |