Gene Amir_5875 details

Gene Information

• Locus tag: Amir_5875
• ID: 8330082
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Actinosynnema mirum DSM 43827
• Kingdom: Bacteria
• Replicon accession: NC_013093
• Strand: -
• Start bp: 6916175
• End bp: 6918115
• Gene Length: 1941 bp
• Protein Length: 646 aa
• Translation table: 11
• GC content: 75%
• IMG OID: 644946307
• Product: Patatin
• Protein accession: YP_003103530
• Protein GI: 256379870

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 0.854691
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCGGCAG GCGACGGGGA CTACGGGGAC TACGAGGACT TCGACAGGTG CTGCGACCTG 
ACCATGCGCG GCGGGGCCAC GAGCGGGATC GTCTACCCGC TGGCCGTGGT CGAGCTGTCC 
AAGCACTACC GGTTCCGCTC GCTCGGCGGG GCCTCGGCCG GGGCGATCGG GGCCTCGTTC 
GCGGCGGCGG CCGAGCGCGG GCGGGACAGC GGCGGGTTCG ACCGGCTCGC CGACACGGTC 
ACCTGGTTCG CGTCCGGGCG GCAGCGGCTC GCCCAGCTGT TCCAGCCGAC CAGGGCCACC 
CGCAAGCTCT ACCGGCTGGT CACCGCGACC ATGCAGAGCC GGGAGACCAC CGGGCGCAGC 
GCGGCGGTGT CCCTGGTGTT CGCGCTGCTG GGCGCGATCG GCCCGCGGGC CAAGGCCGCG 
CTCGCCGCGG CGCTGCTGGT CTGGCTGGCC GGGCCTGCGC TGTGGTTCGG CGCGGTCGCC 
TGGCCCGGCT TCCCGACCTG GGGGCTGGCG GCCGTCGTCG TGGTGGCGGC GGTCACGGTG 
CCGTGGGTGG CGGTGAAGGC GCTGCCCACC GGGCGCGGAC CGCTGCCCGC CCGGATCGGC 
CTGCTGCTGC TGGCTGCCGT CCCGCTCTAC CCGATCGTCC CCCGGCTGCG CGTGGACTGG 
GCGGTGCTGG CGTCGGCGGC CACCGCCGGG GTGGTGTGGC TGGTGCTCGG CTTCGGGCTG 
GCCAGCGCGG TCGTCCTGAT CTACGCGGGC GGGGTGCGCA GGTTCGTGCG CGAGCGGGCC 
GTGTCCATCG GCTTCGGGCT CGTGCCCGGC ACCGGCGGCT ACCGGGCGAG CTGGTGGGAC 
CGCCGCTGCG GGATGCCGAA GTCCACCGAC GTCCCGCCGC TGAGCGACTG GCTCGCCGAC 
TCCCTCGACC ACCTCTCGGG CGTGCGCGGG CTGCGCTTCT CCGACCTCAC CACGAACCTG 
GTGCTGATGA GCACCGACGT GTCCGAGGGC CGCCCGTGCA GGCTGCCGTT CACCTCGGAC 
GACCGGTGGC TGTTCTGCGC CGACTGCCTC GCGGGGGTGC TGCCCGCGCG GGTGGTCGAC 
CTGCTCGGCG ACGAGGGCGC GGACGACAAG CGCTGCCCGC TGCACCCGGC GACCGCGCTG 
CGCGTGCTGC CCGCCGACCT CCCGGTGGCG CTCGCGGTGC GGATGAGCAT TCCGATGCCC 
GGCCTGATCT CGGCGGTGCC GCTGGTGCGC GCCGAACCCG AGCCGAGGGT GCACTGGTTC 
TCGGACGGCG GCATCACCAG CAACTTCCCC ATCCACTTCT TCGACACCCT GCTGCCCCGC 
TGGCCCACGT TCGGGCTCAC CCTGCAGGGC TACCCGGCGC CGGGCGTGCA GGACGTGTGG 
CTGCCCGAGC AGGACGCCTC GCAGGAGGGC AGGCCGTGGC GGTCGGTCAC CGGCGCGGTC 
GGGTTCGCGC AGGCGGTCCT GGACACCGCG CTCGGCTGGC GGGACGCGAT GCAGTCGGCG 
CTGCCGGGCT TCCGGGGGCG GATCGCGCAC GTGCGGCTGC GCGGCGGGGA GGGCGGCACG 
AACCTGTTCA TGCGGCCGGA GACGATCCGG GCGCTGGCCG AGCGCGGCCG GGTCGCGGGC 
GAGCTGCTGC GCACCAGGTT CACCCAGGAG GGCGGCGAGC GGACCGCGCG GTACCGGTGG 
ATCCGGATGC GGATCGCCAT GCGCGAGTAC CAGGAGCTGG CCAGGCAGGC GCGCGAGCGC 
GGCGAGCAGT ACCGGGAGCT GGCGGACGGC TACCCGGTGC CGGAGGAGCT GAAGTCCTGG 
TTCGCGGACC CGCCCGCCGG GACCGACCCG TTCTCGGCCG ACGTGCGGCT GACCCTGGAC 
CAGCTCGGCG GCCTGGTGCC CGGCCCGTTC GACGGTGCGC CGCCGGTGAA CCCGGACCTG 
CGGCTCAACC CGGCCGAGTG A 

 

Protein sequence

MAAGDGDYGD YEDFDRCCDL TMRGGATSGI VYPLAVVELS KHYRFRSLGG ASAGAIGASF 
AAAAERGRDS GGFDRLADTV TWFASGRQRL AQLFQPTRAT RKLYRLVTAT MQSRETTGRS 
AAVSLVFALL GAIGPRAKAA LAAALLVWLA GPALWFGAVA WPGFPTWGLA AVVVVAAVTV 
PWVAVKALPT GRGPLPARIG LLLLAAVPLY PIVPRLRVDW AVLASAATAG VVWLVLGFGL 
ASAVVLIYAG GVRRFVRERA VSIGFGLVPG TGGYRASWWD RRCGMPKSTD VPPLSDWLAD 
SLDHLSGVRG LRFSDLTTNL VLMSTDVSEG RPCRLPFTSD DRWLFCADCL AGVLPARVVD 
LLGDEGADDK RCPLHPATAL RVLPADLPVA LAVRMSIPMP GLISAVPLVR AEPEPRVHWF 
SDGGITSNFP IHFFDTLLPR WPTFGLTLQG YPAPGVQDVW LPEQDASQEG RPWRSVTGAV 
GFAQAVLDTA LGWRDAMQSA LPGFRGRIAH VRLRGGEGGT NLFMRPETIR ALAERGRVAG 
ELLRTRFTQE GGERTARYRW IRMRIAMREY QELARQARER GEQYRELADG YPVPEELKSW 
FADPPAGTDP FSADVRLTLD QLGGLVPGPF DGAPPVNPDL RLNPAE