| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_5748 |
|---|
| Symbol | |
|---|
| ID | 8329955 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Actinosynnema mirum DSM 43827 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013093 |
|---|
| Strand | - |
|---|
| Start bp | 6776394 |
|---|
| End bp | 6777752 |
|---|
| Gene Length | 1359 bp |
|---|
| Protein Length | 452 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 77% |
|---|
| IMG OID | 644946185 |
|---|
| Product | aminotransferase class V |
|---|
| Protein accession | YP_003103408 |
|---|
| Protein GI | 256379748 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0520] Selenocysteine lyase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.380552 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGCTCG CCGTTTCCCG CACCGCCGCC CGCACCGTCG TCGAGACCGC CGACGCCGCC
CCCGTCGCCG CCGCCCTCCC CGCCGTCGTC GGCGCGGCGC TGCGGGTGCC GCTGGTCACC
GGGGAGCGGG TCGAGTACGC CAACCTCGAC AACGCCGCCT CCACCCCCTG CCTGGAGCAG
GTGCGCGACG CCGTCGACGA GCTGCTGCCC TGGTACGCCT CCGTGCACCG GGGCGCCGGG
TTCGCGTCCA AGGTGTCCAC CCGCGTCTAC GAGCAGGCCC GCGACTCGGT GCGGCGGTTC
ACCGGCGCCC GCTCCAGCGA CACCGTCGTG TTCACCCGCA ACACCACCGA CTCGCTCAAC
GCCCTCGCCC GCGCCGTCCC CAGGGGCACC TCCGTGCTCC TGTTCGACAC CGAGCACCAC
GCGGCCCTGC TGCCGTGGCG CGGGCCGAAC GTGCGCCGCC TGCGCACCCC CGGCACGCCC
GCCGAGGCCG CCCGCGTGCT CGACGCCGCG CTCGCCGAGT GCCCGGTCGG GCCGCGCCTG
GTGGTGCTGA CCGGCGCGTC CAACGTCACC GGCGAGGTGT GGCCGGTCGC CGAGCTGGCC
GCGATCGCCC GCCGCCGGGG CGCGCGCACC GTGCTCGACG CCGCCCAGCT CGCCCCGCAC
CGCCCCCTCG ACATCAAGGA GCTGGGCGTC GACTACGTCG CCTTCTCCGG CCACAAGCTC
TACGCCCCGT TCGGCGCGGG CGTGCTGGTC GGCCGCGCCG ACTGGCTCCA GGCCGCCGAG
CCCTACCTGG TCGGCGGGGG CGCGACCTCG CTGGTCACCG ACCACGGCGA CCACCTCGGC
GTCGCCTGGT CCCGCGTGCC CGAGCGGCAC GAGGCCGGGT CGCCCAACGT GGTCGGCGTG
CACGCGCTCG CCGTCGCCTG CGACGTCCTC GGCCGCAACT GGAATCGGGC CGTCGCGCAC
GAGCGGGCCC TGCTGGAGCG GCTGCGCGCG GGCCTGGCGA CCGTGCCCGG CGTGCGCGAG
CTGTCCCTGT TCGGCTCCGG GCAGGACCGG GTCGGCGTGG TCAGCTTCAC CGTCTCGGGC
CAGGACTCCG GCTACCTCGC CGCCGCCCTG TCCGCCGAGC ACGGCATCGG CGTGCGCGAC
GGCGCGTTCT GCGCCCACGT CGCCGTGCAC CGCCTCACCG GCGGCGAGCG CGCCCTGCGC
GCCTCCCTGG GCCTGGGCTC CACCGAGGAG CACGTGGACC GCCTCGTCGC CGCGCTGCGC
TCCCTCATCA CCGAGGGCCC CAAGGTCGCC TACGCCCAGC GCGACGGCCG CTGGGAGCCC
GTCGTGGACG ACCGCGCCCT GCCGCCGTTC CTGGCCTGA
|
|---|
| Protein sequence | MTLAVSRTAA RTVVETADAA PVAAALPAVV GAALRVPLVT GERVEYANLD NAASTPCLEQ
VRDAVDELLP WYASVHRGAG FASKVSTRVY EQARDSVRRF TGARSSDTVV FTRNTTDSLN
ALARAVPRGT SVLLFDTEHH AALLPWRGPN VRRLRTPGTP AEAARVLDAA LAECPVGPRL
VVLTGASNVT GEVWPVAELA AIARRRGART VLDAAQLAPH RPLDIKELGV DYVAFSGHKL
YAPFGAGVLV GRADWLQAAE PYLVGGGATS LVTDHGDHLG VAWSRVPERH EAGSPNVVGV
HALAVACDVL GRNWNRAVAH ERALLERLRA GLATVPGVRE LSLFGSGQDR VGVVSFTVSG
QDSGYLAAAL SAEHGIGVRD GAFCAHVAVH RLTGGERALR ASLGLGSTEE HVDRLVAALR
SLITEGPKVA YAQRDGRWEP VVDDRALPPF LA
|
|---|
| |