Gene Amir_5684 details

Gene Information

• Locus tag: Amir_5684
• ID: 8329891
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Actinosynnema mirum DSM 43827
• Kingdom: Bacteria
• Replicon accession: NC_013093
• Strand: -
• Start bp: 6705946
• End bp: 6707874
• Gene Length: 1929 bp
• Protein Length: 642 aa
• Translation table: 11
• GC content: 76%
• IMG OID: 644946122
• Product: RNA polymerase, sigma-24 subunit, ECF subfamily
• Protein accession: YP_003103345
• Protein GI: 256379685
• COG category: [K] Transcription
• COG ID: [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog
• TIGRFAM ID: [TIGR02937] RNA polymerase sigma factor, sigma-70 family

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 0.354384
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCGGACAC CGCACGAGCC CGGCGCGGCG ACGGTCGTCG CGGCGCAGCG CGGCGAGGAC 
GGCGCCCTCG ACGAGCTGGT CGCGGCCTAC CTGCCGCTGG TCTACAACGT CGTCGGCCAC 
GCGCTGGGCG GCCACCCGGA CACCGACGAC GTCGTCCAGG AGACGATGCT GCGCGCCGTC 
GACTCGCTCG GCGAGCTGCG CGACCCGGCA GCGTTCCGGT CGTGGCTGCT GGTCATCGCC 
ATGAACCAGG TCCGCGAGCG GCACCGGCGG CGGCTGCCGC TGCCCGTGGA CGAGCGGTCC 
CTGGCCGACC GGGCCGACCC CGGCGCGGAC TTCGTCGACC TCGCGCTCAC CAAGCTCCAC 
CTGACCGGGC AGCGGCGGGA GGTGGTGGCC GCGACCCGCT GGCTCGGCGA GGAGGAGCGG 
GAGCTGCTGT CGCTGTGGTG GATGGAGGCG GTCGGGCGGA TCACCCGCGC CGAGCTGGTC 
GAGGCGGTCG GGATCAGCGC GCAGCACGCG GCGGTGCGGG TGCAGCGGAT GAAGGCGCAG 
CTGGACGCGT CGCGGGTGGT CGTGCGGGTG CTCGCGGTCG TGCCCCGGTG CGGGGAGCTG 
GCGCACGTCG TGGGGGACTG GGACGGGGAG CCCAGCGCGC TGTGGCGCAA GCGGGTCATG 
CGGCACGCGC GGGAGTGCGA GCGGTGCGCG GCGGCGTTCG ACGACCTGGC GGCGGTGGAC 
GGCCTGGTGG CGCGGCTGCC GCTGGTGCCG GTGCCGTTCG CGCTGGACCC GTCGCTGTGG 
GGCGCGGCCG GGGGCGCGGG CGAGGCGCTG GTGGGGCAGG GCGCCGGTCA GGCCGGGCAG 
GGCGTCGGGC ACGCCGGTCA CGGCACGGCC CAGCCCGCCG CCACGGCCCA GTCGCTCAAG 
GCGGTCGGCG CGGTGAAGAA GGGCTTCTGG GCGCAGGTCG CCGCCAAGCC CCTGGTGGTC 
GCGACGGCGG TCGCCGCGAT CGCGACGGCC GCCGTGGTGG CCCCGATGGC GCTGCCCGCC 
GACGAGCCGC CCGCGCCGGC CGCCCAGGTC ACCCTCCCGC CGACGTTCAC CACGCAGCCG 
CTGCCCGAGT CCTCGGCCGC GCCCACCACG ACCACCGCGC CCAGCTCCAG CAGCCCGGCC 
CCGACCACCA CCACCCAGCC GCAGCCCGCC GTGGCCGCGC CCCGCCCGCC CGCCGCGCCG 
TCGGCGAAGA AGGGCGTCAG CACCTGGAAC TTCGACGGCG TCGGCAGGGC GCTCGGCGAC 
GTCGGCGCGG GCTGGGTCTA CAACTGGGCG CCCACCAGGG AGGACCTGGT GATTCCGCAG 
GGCGTCGAGT TCGTGCCGAT GATCTGGGGC GCGAAGACGG TGACCCCGGC GAACCTGGCC 
GCCGTGAAGG GCCAGGGCGG CACGCTGCTC GGCTTCAACG AGCCGGACCT GGGCGAGCAG 
TCGAACATGA GCGTCGAGCA GGCCCTCGAC CTGTGGCCGC AGCTCCAGGC CACCGGGATG 
CGCCTGGGCA GCCCGGCCGT CGCCTACGGC GGCGACAAGG CGGGAGGCTG GCTCGACCGG 
TTCATGGCCG GGGCCAAGCA GCGCGGCCTG CGCGTCGACT TCATCACCCT GCACTGGTAC 
GGCTCGGACT TCAGCGCCGC CGCCGTCGGC CACCTGAAGA ACTACCTGGA CGCGGTGCGC 
GCCCGGTACG GGCTGCCCGT CTGGGTGACC GAGTACTCGC TGATCGACTG GTCGGGCGGC 
GCGGCGCGGT ACCCGAGCGC GAGCGAGCTG GCGGCGTTCG CGAGCGGCTC GGCCCGGATG 
ATGGAGGGCC TGCCGTGGGT GGAGCGCTAC GCCTGGTTCG CGCTCCCCGC CGACAAGCCG 
GGGACCGGGC TGTACACGCC GGGCGGCGTC CCCAACGCGG CCGGTGAGGC GTACCGGTCG 
GTGGGGTAG 

 

Protein sequence

MRTPHEPGAA TVVAAQRGED GALDELVAAY LPLVYNVVGH ALGGHPDTDD VVQETMLRAV 
DSLGELRDPA AFRSWLLVIA MNQVRERHRR RLPLPVDERS LADRADPGAD FVDLALTKLH 
LTGQRREVVA ATRWLGEEER ELLSLWWMEA VGRITRAELV EAVGISAQHA AVRVQRMKAQ 
LDASRVVVRV LAVVPRCGEL AHVVGDWDGE PSALWRKRVM RHARECERCA AAFDDLAAVD 
GLVARLPLVP VPFALDPSLW GAAGGAGEAL VGQGAGQAGQ GVGHAGHGTA QPAATAQSLK 
AVGAVKKGFW AQVAAKPLVV ATAVAAIATA AVVAPMALPA DEPPAPAAQV TLPPTFTTQP 
LPESSAAPTT TTAPSSSSPA PTTTTQPQPA VAAPRPPAAP SAKKGVSTWN FDGVGRALGD 
VGAGWVYNWA PTREDLVIPQ GVEFVPMIWG AKTVTPANLA AVKGQGGTLL GFNEPDLGEQ 
SNMSVEQALD LWPQLQATGM RLGSPAVAYG GDKAGGWLDR FMAGAKQRGL RVDFITLHWY 
GSDFSAAAVG HLKNYLDAVR ARYGLPVWVT EYSLIDWSGG AARYPSASEL AAFASGSARM 
MEGLPWVERY AWFALPADKP GTGLYTPGGV PNAAGEAYRS VG