Gene Amir_5678 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAmir_5678 
Symbol 
ID8329885 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameActinosynnema mirum DSM 43827 
KingdomBacteria 
Replicon accessionNC_013093 
Strand- 
Start bp6698964 
End bp6699629 
Gene Length666 bp 
Protein Length221 aa 
Translation table11 
GC content74% 
IMG OID644946116 
ProductSNARE associated Golgi protein 
Protein accessionYP_003103339 
Protein GI256379679 
COG category[S] Function unknown 
COG ID[COG0586] Uncharacterized membrane-associated protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGGTTTTG TGACCGACGC GCTCGACGGG CTCGCCGGCC TGCCCCAACC GGCGGTCCTG 
GCGGTCACCG GCGCGATGAC GCTCGCGGAG TGCACCCTCG GCGTGGGCTT CCTCGCCCCC 
GGCGAGACGG CGCTGCTGCT GGCGTCGACG ACCGCGAACA CGCTCTCGCG CTTCCTCGTC 
ATGTGGCTGG TGGTGACCGT GTGCGCCGTC GCCGGCGACA GCATCGGCTA CTACCTGGGC 
AGGCGCTTCG GCGACCGGCT GCGGGCGAGC AGGCTGGTGC GCAAGATCGG CCAGCAGCAC 
TGGGACAAGG CGGGCGAGCT GCTGCGCAGG CGCGGCGCGT ACGCCGTGTT CATCGCCCGG 
TTCATGCCCG TCGTGCGCAC CCTCGTGCCC GCCTCCGCGG GCGCGGCCAA GCTCGACTAC 
CGCAAGTTCC TGCCCGCCTC GATCGCGGGC GCCGCCGCCT GGTCCGCGCT GCACATCGGC 
ATCGGCTCGG CCGCGGGAGC CTCGGCCAAG TACATCGAGG CCGCGTTCGG CCGGGCCATG 
TGGGGCGTCA TGGCGGTCGG CTGCCTGATC GCGCTGGTCG TGTACCTGTG CAAGCGCCGG 
GCCGCCGCGC GCGCCGCCGA GGCCACCCGG CCCGACGCCG AGCCGGCGCT GGTGGGCGAG 
TCCTGA
 
Protein sequence
MGFVTDALDG LAGLPQPAVL AVTGAMTLAE CTLGVGFLAP GETALLLAST TANTLSRFLV 
MWLVVTVCAV AGDSIGYYLG RRFGDRLRAS RLVRKIGQQH WDKAGELLRR RGAYAVFIAR 
FMPVVRTLVP ASAGAAKLDY RKFLPASIAG AAAWSALHIG IGSAAGASAK YIEAAFGRAM 
WGVMAVGCLI ALVVYLCKRR AAARAAEATR PDAEPALVGE S