Gene Amir_5669 details

Gene Information

• Locus tag: Amir_5669
• ID: 8329876
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Actinosynnema mirum DSM 43827
• Kingdom: Bacteria
• Replicon accession: NC_013093
• Strand: +
• Start bp: 6681818
• End bp: 6683872
• Gene Length: 2055 bp
• Protein Length: 684 aa
• Translation table: 11
• GC content: 73%
• IMG OID: 644946107
• Product: 3-hydroxyacyl-CoA dehydrogenase NAD-binding
• Protein accession: YP_003103330
• Protein GI: 256379670
• COG category: [I] Lipid transport and metabolism
• COG ID: [COG1250] 3-hydroxyacyl-CoA dehydrogenase

Plasmid Coverage information

• Num covering plasmid clones: 17
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCCATCC GCTACGAGCG GGACGCCGAG GGCGTCGTCA CGCTGACCAT GGACATGTCG 
GGCTCGGCCA ACGTGATGAA CGCCGAGTAC CAGGAGGCGA TGGGCGCGGT CGTCGACCGG 
CTGGAGGCCG AGCGCGACGA GATCGCGGGT GTGGTGCTGA CCTCGGCGAA GAAGACGTTC 
TTCGCGGGCG GCGACCTGAA CCTGCTGGTG TCGGTGACGC CGGAGAACTC CGCCGAGGTG 
CTGGCGGGCG TGTCGGACGT GAAGGCGCAG CTGCGCAGGC TGGAGAAGCT CGGCAGGCCG 
GTGGTGGCCG CGATCGCGGG CGCGGCGCTC GGCGGCGGGC TGGAGATCGC GCTGGCCTGC 
CACCACCGGG TGGTGCTGGA CGACGACCGG ATCAAGCTGG GGCTGCCCGA GGTGACGCTG 
GGGCTGCTGC CCGGCGGCGG CGGGGTCACC AGGATGGTGC GGATGCTGGG TCTCCAGGCC 
GCGCTGCCGC TGCTGATGGA GGGCAAGCAG CTGCGCCCGA AGCGCGCGCT GGAGGCCGGG 
TTCGTCGACG AGCTGGCCTC CTCGAAGGAA GACCTCCTCG CCAAGGCGCG GGCCTGGATC 
GCGGCCAACC CGGAGCCGGT GCAGCCGTGG GACCGCAAGG GGCACGCCGT TCCCGGCTTC 
CGGGCGTTCG ACCCGCAGTC GTACGGGGTG CTCGCGGCGG CGCCCGCCGT GCTGCACAAG 
AGGACGCGGG GCGCGTTCCC CGCGCCGGAG AAGATCCTGG CGGCGGCCGT GGAGGGCGCG 
CTGGTCGACT TCGACACCGC GCTCGTGGTG GAGGACCGGT ACTTCCTGGA GCTGGTGTCC 
GGGCAGGTCG CCAAGAACAT GATCGGCACG TTCTGGTTCC AGCTGGGCGA GATCGCCGCG 
GGCGGGTCGC GACCGTCCGG TGTGGAGCGC ACCTCGGTGG CCAGGGTCGG GGTGCTCGGC 
GCGGGCATGA TGGGCGCCGG GATCGCCGAG GTGACCGCGA GGGCGGGCAT CCCGGTGGTG 
CTCAAGGACG TGACGCTGGA GGCCGCGCGG CGCGGCGCGG GCGAGAACCC CGGCATCACG 
CCCACCGACT CGGACGCCGA CCTCGCCGGG TGCGACCTGG TGATCGAGGC GGTGTTCGAG 
GACCGGGAGC TGAAGAACCG GGTGCTCGCG GACGCCGGGT CGGCCGCGCT GGACGGCGCG 
GTGATCGCGT CCAACACCTC CACGCTGCCG ATCACCGGGC TCGCCGGGGC GGTGGCGGAC 
CCGGAGCGGT TCATCGGGCT GCACTTCTTC TCGCCGGTGC CGAAGATGCG CCTGGTGGAG 
ATCATCCGGG GCGAGCGGAC CTCGGACGAG ACGCTGGCCC GCGCGTTCGA CTACGTGCTG 
AAGATCGGCA AGACGCCGAT CGTGGTCAAC GACAGCCGGG GCTTCTACAC CTCGCGCACG 
TTCGGCGCGT ACGTCACCGA GGCCATCGCG ATGGTCGGCG AGGGCGTGGC CCCCGCGCTG 
GTGGAGAACG TCGCCAAGCG CGCCGGGATG GCCGTGGGGC CGCTCGCGGT GTCCGACGAG 
GTGACGCTGA CGCTCCAGCT GCGCATCCGC GACCAGGCCG TGGCCGACGG CGGGACCGGG 
GCGGGCGGCG CGGGCGTGCG GGTGGTGGAG GAGCTGGTCG CCGAGGGGCG GACCGGCAAG 
TCCGGCGGGG CCGGGTTCTA CGAGTACCCC GAGGGCGGGC GGAAGTTCCT GTGGCCGGGG 
CTGGCCCGGT ACGGGCGCGC GGACGCCGGG GTCACCGAGC GGGACGTCGA GGACCGGCTG 
CTGTTCGCGC AGACCCTGGA GTCGGTGCGG TGCCTGGACG AGGGGGTGCT CACGTCGGTG 
CGCGACGCCA ACGTGGGCAG CGTCCTCGGG TTCGGGTTCG CGCCGTGGAG CGGCGGGACG 
CTCCAGTTCG CCAACGCCTA CGGGCTGGCG GCGTTCGTGG AGCGCGCCGA CTACCTCGCG 
GACACCTACG GCGAGCGGTT CCGGCCGCCG TCGTCGCTGC GCGAGCGGGC CAAGTCGGGC 
GAGGACTACC GGTAG 

 

Protein sequence

MAIRYERDAE GVVTLTMDMS GSANVMNAEY QEAMGAVVDR LEAERDEIAG VVLTSAKKTF 
FAGGDLNLLV SVTPENSAEV LAGVSDVKAQ LRRLEKLGRP VVAAIAGAAL GGGLEIALAC 
HHRVVLDDDR IKLGLPEVTL GLLPGGGGVT RMVRMLGLQA ALPLLMEGKQ LRPKRALEAG 
FVDELASSKE DLLAKARAWI AANPEPVQPW DRKGHAVPGF RAFDPQSYGV LAAAPAVLHK 
RTRGAFPAPE KILAAAVEGA LVDFDTALVV EDRYFLELVS GQVAKNMIGT FWFQLGEIAA 
GGSRPSGVER TSVARVGVLG AGMMGAGIAE VTARAGIPVV LKDVTLEAAR RGAGENPGIT 
PTDSDADLAG CDLVIEAVFE DRELKNRVLA DAGSAALDGA VIASNTSTLP ITGLAGAVAD 
PERFIGLHFF SPVPKMRLVE IIRGERTSDE TLARAFDYVL KIGKTPIVVN DSRGFYTSRT 
FGAYVTEAIA MVGEGVAPAL VENVAKRAGM AVGPLAVSDE VTLTLQLRIR DQAVADGGTG 
AGGAGVRVVE ELVAEGRTGK SGGAGFYEYP EGGRKFLWPG LARYGRADAG VTERDVEDRL 
LFAQTLESVR CLDEGVLTSV RDANVGSVLG FGFAPWSGGT LQFANAYGLA AFVERADYLA 
DTYGERFRPP SSLRERAKSG EDYR