Gene Amir_5526 details

Gene Information

• Locus tag: Amir_5526
• ID: 8329732
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Actinosynnema mirum DSM 43827
• Kingdom: Bacteria
• Replicon accession: NC_013093
• Strand: +
• Start bp: 6562341
• End bp: 6564236
• Gene Length: 1896 bp
• Protein Length: 631 aa
• Translation table: 11
• GC content: 74%
• IMG OID: 644945966
• Product: YhgE/Pip C-terminal domain protein
• Protein accession: YP_003103190
• Protein GI: 256379530
• COG category: [S] Function unknown
• COG ID: [COG1511] Predicted membrane protein
• TIGRFAM ID: [TIGR03057] X-X-X-Leu-X-X-Gly heptad repeats; [TIGR03061] YhgE/Pip N-terminal domain; [TIGR03062] YhgE/Pip C-terminal domain

Plasmid Coverage information

• Num covering plasmid clones: 17
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGACCTCCC TGCGCATGGC GCTGAACGAG CTGCGCCGCG TCACCTCGGG CAGGCTGCCC 
AGGCTGGCCG TGGTGGCGCT GGCCCTGGTG CCGCTGCTGT ACGCGTCGAT GTACCTGTAC 
GCCAACAAGG ACCCGTACTC GCACCTGGAC AACCTGCCCG CCGCCCTGGT CGTCGCCGAC 
CGGGGCTCCG ACGACGGCTC CGGCGCCACC GAGAACGCCG GGCGCGAGGT CGCCGACGAG 
CTGCTGCGCG GCCACAAGTT CGACTGGCGC GAGGTGGGCG GGGGCGACGC CGAGCGGGGC 
GTGCGCGACG GCGAGTACGC GTTCGCGCTG ACCCTGCCCG AGGACTTCTC GCAGGCGCTG 
ACCTCGTCCG GCCGGTTCAC CCCGCGCCAG GGCGTGCTCG TGCTCACCAC CAACGACGCC 
AACAACTACC TGGGCAGCAC GATCGCGAAC CAGGTGGTGT CCGAGGTGCG CCGCTCGGTG 
TCGGCGAAGG TCGGCACGCA GGCGGCCGAC CGGTTCCTGC TGGGCTTCTC GACCGTGCGG 
GAGAAGACCG AGCAGGCCGC GAAGGGCGCG ACCGAGCTGG CCGACGGGCA GCGGACCGCG 
CTGGACGGCG CGCGGAAGCT CGCCGACGGC ACCGGGACCC TGGCGAACGG CGCGGCCGAG 
CTGGCGAGCG GCACCGGGCA GCTGCGCAGC AGCACCGCCG ACCTGCCGCG CTCGGCGCAG 
CAGCTCGCGG ACGGGGCCAA GCAGGTCTCG GACGGCGCCG AGCAGGCCGC CAGGACCGCC 
GAGCAGTACG CCGCCGAGGC GCGGACCCTC GCCGCGGACC TGGACAAGGT CGACGCCGAC 
CTGGTCGCTC GGCTGCGCGA GCGCGGGTTC ACCGACGAGC AGGTGCAGCA GGTCCAGACC 
GCGCTGGGGA CCGTGCGCGC GCCCGCCGCC GACGCGAACA CCAAGGTCCA GGACACCGCC 
GGTCAGCTGC GGACCCTGGC GAACGGCGCG AAGAAGGTGT CCGACGGGGC GGCGAAGCTC 
GCCTCCAGCA CACCTTCGCT GACCGGTGCG ATCGGCAAGC TGGACGACGG CGCCAAGCAG 
CTCTCCGGCG GCGCGGGCCA GGTCCGCGAC GGCGCGGGGT CACTGCGCGA GGGCGAGCAG 
AAGCTCGTGG ACGGGACCGA GCAGCTCAGG TCCGGGCTGA CCGAGGGCGT CGAGCAGATC 
CCGCACCCCG ACGACCCGAC GCGCGAGTCC ACGGCGGGCA CCATCGGCGA CCCGGTGACG 
GTGCGCGGGG TCAGCCAGAC CTCGGCGGGC AGCTACGGCG CGGGCCTCGC CCCGTTCTTC 
CTGAGCCTGG CCACCTGGAT CGGCGCGTTC GTGCTGTTCC TGCTGCTGCG CCCGCTGTCG 
CGGCGCGGGC TGGCGTCCGG GCAGGCGGCG GTGCGGGTGG CGCTCGGCGG GTGGCTGCCG 
GGGGCGCTGC TGGGCGTGGC GCAGGTGGTG GTCATGTACT CGGTGGTGAC GCTGGTCGTG 
GACATCCGGC CGAGCCACCC GGTGGGGGCG CTGCTGTTCC TGTTCCTGGC GTCGGTGACG 
TTCGTGGCCG TGCTGCACGC GCTCAACGCG CTGCTCGGCG CGGTCGGCAA GTTCCTGGGG 
CTGGTCATGC TGATCCTGCA GCTGGTCAGC GCGGGCGGCA CGTTCCCGTG GCAGACCATC 
CCCGAGCCGC TGTACCCGCT GCACCACGGG CTGCCGATGA GCTACGCAGT GGACGGGCTG 
CGGCACCTGA TGTACGGCGG TGAGCTCGGA CCGGTGTGGT CGGACGCGAC CGTGCTGGGC 
TGCTACCTGG TCGGGGCGCT TGCCCTGTCG ACGCTGGCCG CGTACAAGCA GCGGGTGTGG 
ACGCCCTCTC GCCTCAAGCC GGAACTCGTG CTGTGA 

 

Protein sequence

MTSLRMALNE LRRVTSGRLP RLAVVALALV PLLYASMYLY ANKDPYSHLD NLPAALVVAD 
RGSDDGSGAT ENAGREVADE LLRGHKFDWR EVGGGDAERG VRDGEYAFAL TLPEDFSQAL 
TSSGRFTPRQ GVLVLTTNDA NNYLGSTIAN QVVSEVRRSV SAKVGTQAAD RFLLGFSTVR 
EKTEQAAKGA TELADGQRTA LDGARKLADG TGTLANGAAE LASGTGQLRS STADLPRSAQ 
QLADGAKQVS DGAEQAARTA EQYAAEARTL AADLDKVDAD LVARLRERGF TDEQVQQVQT 
ALGTVRAPAA DANTKVQDTA GQLRTLANGA KKVSDGAAKL ASSTPSLTGA IGKLDDGAKQ 
LSGGAGQVRD GAGSLREGEQ KLVDGTEQLR SGLTEGVEQI PHPDDPTRES TAGTIGDPVT 
VRGVSQTSAG SYGAGLAPFF LSLATWIGAF VLFLLLRPLS RRGLASGQAA VRVALGGWLP 
GALLGVAQVV VMYSVVTLVV DIRPSHPVGA LLFLFLASVT FVAVLHALNA LLGAVGKFLG 
LVMLILQLVS AGGTFPWQTI PEPLYPLHHG LPMSYAVDGL RHLMYGGELG PVWSDATVLG 
CYLVGALALS TLAAYKQRVW TPSRLKPELV L