Gene Amir_5514 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAmir_5514 
Symbol 
ID8329720 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameActinosynnema mirum DSM 43827 
KingdomBacteria 
Replicon accessionNC_013093 
Strand
Start bp6546560 
End bp6549466 
Gene Length2907 bp 
Protein Length968 aa 
Translation table11 
GC content74% 
IMG OID644945954 
ProductABC transporter related 
Protein accessionYP_003103178 
Protein GI256379518 
COG category[V] Defense mechanisms 
COG ID[COG1131] ABC-type multidrug transport system, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGGCCATCC CTTCCCGCCT TCGCGGCAGG TGGTCGCTCC CCGCGCTGGT CGTGCTCGTC 
GCCTTGGTAG GTGGCGTTGT CGTCTGGACG CGCGGGGGCG ACGACCCGCC GCAGGTGCAC
ACCCGTGACG CGGTGATCGA CGTCCCGGAG GCCCCCGGCA GCGACCGGGC CCTCCAGATC
GACACCACCC TCTACCTGCC CGAGAAGACC CCGGCTCCGG CGATCCTGCT CCCGCACGGA
TTCGGCGGCA GCAAGAACAG CGTGGCCACC GAGGCGACCG AACTGGCCCA GCGCGGCTTC
GTCGTGCTGA CCTACTCGGC CCGCGGCTTC GGCCGCAGCA CCGGGCAGAT CTCGCTCAAC
TCGGTCGACC ACGAGGTCAA CGACGCCAAG CGCCTGCTCG ACTGGCTCGC GACCCGCCAG
GAGGTCATGA CCGACGCCCC CGGCGACCCG AGGGTCGGCG TCACCGGCGG CTCCTACGGC
GGCGCGCTCG CGCTGTCCCT GGCGGGCGTC GACCCGCGCG TGGACACCAT CGCGCCCACC
ATCACGTTCA ACGACCTCGC CTCCGCCCTG CTGCCGAACC ACGGCGCCAC CGGCGAGGCG
GTCGACACCC GCACGCCCAC GCCCGGCCCG TCCGGCGACG CGGGCGTGTT CAAGCGCTCG
TGGTCCGGCC TGTTCTTCTC CGCCGGTCTC GGCGGCGGGA ACATGTCCGG CCCCACGCAG
GAGGCCCCCG AGGCCGGTCA GGACGACGAC CAGCAGGTCG GCGCCGCCGC GACCGCCGCC
CCCGAGGGCT CGACGGCCGA GGGCTCGGCG ACCGGTCAGC CCGGTCAGGG CCAGCAGCCC
GGCCAGGGCA GGGGCGCGGC CCCGCTCAAC GGCACCTGCG GTCGCTTCGC CGAGGACGTG
TGCGCGGCGT ACAACGAGAT CGCCACGACC GGCACCGCGG GCCAGGCGTC CCTGGACGTG
CTGCGCCGCG GCTCGCCCTC CGAGCTGACC GGCCGGATCA CCCAGCCGAC CATGATCGTG
CAGGGCGAGC AGGACACCCT GTTCGGCCTC GACCAGGCCG ACGCCAACGC CAGGCAGATC
GCCGCGACCG GCGCCAAGGT CAAGGTCGTC TGGTACGCGG GCGGCCACGA CGGCGGCTCC
CCCGGCCCCG AGCTGCGCGG CCAGATCGCC GACTGGATGG ACTTCCACCT CAACGGCGCG
GGGACCGACC CCGGCACCAC GTTCCAGTAC GCGGTGCAGG GCGCGTTCCG CAGCAGCGGC
TCGGTCGCGC TGCGCGACGT CGTCGCCCCG GCCTACCCCG GTCTCGGCGG CCAGGCCGCG
GTGAACCGGC AGGACGTGGC GCTGACCGGC CGCGAGCAGG CCGTGATCAA CCCGGCGGGC
GGCAACCCGG CGTCGGTGAG CAGCCTGCCC GGTCTGGGCG CGGCGGTCAG CCGGTCCAGC
TCGCTCTCCA GCAGGCTCAC GATCGACATG CCCGGCCAGA CCGCCGTGTT CACCAGCGAG
GCCCTGACCT CGCAGCTGCT GGTGACCGGC GCGTCCACGG TGCGGCTGAA GATCGCCGCC
GTGCCCGGCC AGGCCGTGCC CGAGGGCGGC GCGGTGCTGT TCGCGAAGCT GTACGACGCC
GACGCGAACG GCGGCAAGGT GCTGCCCGGC TCGGCCGTGG CCCCGTTCCG GGTGCCCGAG
CTGCCCGCCG ACGGCACGCC CGTCGAGGTG TCGGTGTCGC TGCCGGGCGT GGTGCGCCCG
GTGGAGAGCG GGCACCGGCT GCAGCTGGCC GTGTCGACCA CCGACCAGGC GTTCGCCAAC
GCGCAGGAGC CCGCCGTCTA CCGGATCGCG CTCGCCGACG GCGACACCGG GAACGTGCGG
GTGCCGGTGG TGACCGGCTC GAACAGGGTC AGCGAGGTGC CCGCCGACGC GCTGTGGGGC
ATCGCGGGCG TGCTCGCGCT GTCCGCCGTC GCGGCCGTCG TCGCGTGGTT CCGGCGCAGG
CTGGCCACCG ACCTCGACCC GGAGCTGGCC GAGGTCCCGC TGGTCATCAA GGGCCTGAAG
AAGTCCTACC CCGGTGGCCT GACCGCCGTG AACGACCTGT CGTTCCGGGT GGAGCACGGC
CAGGTGCTGG GCCTGCTCGG CCCCAACGGC GCGGGCAAGA CCACGTCGCT GCGGATGCTG
ATGGGCCTGA TCCAGCCGAG CGAGGGCGAG ATCAGGGTGT TCGGGCACAG GATCACGCCC
GGCGCCCCGG TGCTCTCCCG CATCGGCTCG TTCGTGGAGG GCTCCGGCTT CCTGCCGCAC
CTGTCCGGCA AGGCCAACCT GGAGCTGTAC TGGTCGGCGA CCGGCAGGCC GCTGGAGCAG
GCGCACTTCG ACGAGGCGCT GGAGATCGCG GGCCTGGGCA AGGCGGTGCA CCGCAAGGTG
CGCACCTACA GCCAGGGCAT GAGGCAGCGG CTCGCGATCG CCCAGGCGAT GCTCGGGCTG
CCGGACCTGC TGGTGCTGGA CGAACCCGCC AACGGGCTCG ACCCGCCCCA GATCCACGCC
ATGCGCGACG TGCTGCGGCG GTACGCGGCG GCCGGTCGCA CGGTGCTGGT GTCCAGCCAC
CTGCTCGCCG AGGTCGAGCA GACGTGCAGC CACGTGGTGG TCATGCACAA GGGCGCCCTG
GTCGCGGCGG GTCCGGTCGA GGAGATCGCG ACCGGCAGCG GCGAGGCCAC CTTCCGGGTC
GACCGGCCCG AGGAGGCGGC GGAGGTGCTG CGGTCCCTCG ACGGGGTGCT GGAGGTCCAG
GTCGACGGCG AGCAGGTGCA CGCGGCGCTG AACGGCACCC CGCGCGCCGA GGCGCTGCAG
GCGCTGGTGG CGGCCGGGGT CTCGGTCGAC CAGGCCGGGC CGCGCAGGCG GCTCGAGGAC
GCGTTCCTGG AGTTGGTGGG CGAATGA
 
Protein sequence
MAIPSRLRGR WSLPALVVLV ALVGGVVVWT RGGDDPPQVH TRDAVIDVPE APGSDRALQI 
DTTLYLPEKT PAPAILLPHG FGGSKNSVAT EATELAQRGF VVLTYSARGF GRSTGQISLN
SVDHEVNDAK RLLDWLATRQ EVMTDAPGDP RVGVTGGSYG GALALSLAGV DPRVDTIAPT
ITFNDLASAL LPNHGATGEA VDTRTPTPGP SGDAGVFKRS WSGLFFSAGL GGGNMSGPTQ
EAPEAGQDDD QQVGAAATAA PEGSTAEGSA TGQPGQGQQP GQGRGAAPLN GTCGRFAEDV
CAAYNEIATT GTAGQASLDV LRRGSPSELT GRITQPTMIV QGEQDTLFGL DQADANARQI
AATGAKVKVV WYAGGHDGGS PGPELRGQIA DWMDFHLNGA GTDPGTTFQY AVQGAFRSSG
SVALRDVVAP AYPGLGGQAA VNRQDVALTG REQAVINPAG GNPASVSSLP GLGAAVSRSS
SLSSRLTIDM PGQTAVFTSE ALTSQLLVTG ASTVRLKIAA VPGQAVPEGG AVLFAKLYDA
DANGGKVLPG SAVAPFRVPE LPADGTPVEV SVSLPGVVRP VESGHRLQLA VSTTDQAFAN
AQEPAVYRIA LADGDTGNVR VPVVTGSNRV SEVPADALWG IAGVLALSAV AAVVAWFRRR
LATDLDPELA EVPLVIKGLK KSYPGGLTAV NDLSFRVEHG QVLGLLGPNG AGKTTSLRML
MGLIQPSEGE IRVFGHRITP GAPVLSRIGS FVEGSGFLPH LSGKANLELY WSATGRPLEQ
AHFDEALEIA GLGKAVHRKV RTYSQGMRQR LAIAQAMLGL PDLLVLDEPA NGLDPPQIHA
MRDVLRRYAA AGRTVLVSSH LLAEVEQTCS HVVVMHKGAL VAAGPVEEIA TGSGEATFRV
DRPEEAAEVL RSLDGVLEVQ VDGEQVHAAL NGTPRAEALQ ALVAAGVSVD QAGPRRRLED
AFLELVGE