Gene Amir_5459 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAmir_5459 
Symbol 
ID8329665 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameActinosynnema mirum DSM 43827 
KingdomBacteria 
Replicon accessionNC_013093 
Strand+ 
Start bp6484733 
End bp6485830 
Gene Length1098 bp 
Protein Length365 aa 
Translation table11 
GC content70% 
IMG OID644945899 
Producttransposase IS4 family protein 
Protein accessionYP_003103123 
Protein GI256379463 
COG category[L] Replication, recombination and repair 
COG ID[COG3293] Transposase and inactivated derivatives 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones7 
Plasmid unclonability p-value0.00365854 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGGAAGACC GCGCACGAGC GTCCGGGCGC ACCGGCACGC TGACGACCAA GCTCCACCCG 
GCCGTCGACA GCGCGGGTCT GCCGTTGGCG GTGATCCTCA CCCCCGGCCA GGCCGGCGAC 
AACCCACAAC GGCTACCGCT GCTCGACAAC ATCCACGACA TCGACATCGA CATCGACGTG 
GACGCGGACG GGCAGCGGGT CCGCGTCGAG CGAGCGATCG CCGACAAGGC CCACGCCCAC 
CCGAGCACTC GCGCGGCGTT ACGACAGCGG CGCATCAAGG CCACCCTTCC CGAGCACGTC 
GACCGGATCG ACCGCCGCAG CGCCAACGGC TCGGCCGGTG GCAGGCCACC GACCTTCGAC 
CCCGACCTCT ACAACCTGCG CAACGTGGTC GAACGCTGCT TCAACCGGCT CAAGCAGTTC 
CGCGGCCTGG CAACCCGCTT CGCGAAACGA GCCGCCTACC ACCGTGCCGA GATCGTTCTC 
GCCAGCATCG TCCTGCACCT CAGGCGAAGA TCCGCAGAAC ATGCCCCAGG CGGCAGTAAT 
CGACCAGGCG CCAGCACTCG GTCAGGCGGG CACAGGTGCG CACCACCCGA CCCACGATGG 
CGACCCAACA GGCCCGAACG CGCCCCTGTG CCGCTGCAGA CGACGCGCGG CGCGAACCCT 
GTCGGAGCCG CCGGGACCAG GGGTCCGGCA GCAGCGCGAT CCCACCGCCA TGCCGGCGAT 
GAAGACGCAG GAGAACGGGC CTGCGCGGCT CGGCGATCCA CACGACTCGT CAGGTGTCGG 
AAGCCGTCGG GGACCGGGAA TCGGAAATTG GAAATCGACC CGAAACAACC GGTCGCAGCC 
CTGCCCCACG GAATCTCTAC CAGCGACGAT CCACACAGGA CATGCTTCGA ACGGCTGGTC 
GAGGGCCCAG GTTCGAGGCC CAGGTTCGAG GGCCCAGGTT CGAGGGCCCA GTGCCCAAGT 
CCGGGCGGCC TGGAGGCCGA GGACTCAGGT CGGCCAGGCG ACTCCGCGAT CGGCGCCGAG 
GCCGAGGCCG CCGTGGTGAC CAGTGTCAGC CCGGAGGAGC CAGAAGCAGC GCCCCGCCCC 
GTCCCGCTGC GGTCCTGA
 
Protein sequence
MEDRARASGR TGTLTTKLHP AVDSAGLPLA VILTPGQAGD NPQRLPLLDN IHDIDIDIDV 
DADGQRVRVE RAIADKAHAH PSTRAALRQR RIKATLPEHV DRIDRRSANG SAGGRPPTFD 
PDLYNLRNVV ERCFNRLKQF RGLATRFAKR AAYHRAEIVL ASIVLHLRRR SAEHAPGGSN 
RPGASTRSGG HRCAPPDPRW RPNRPERAPV PLQTTRGANP VGAAGTRGPA AARSHRHAGD 
EDAGERACAA RRSTRLVRCR KPSGTGNRKL EIDPKQPVAA LPHGISTSDD PHRTCFERLV 
EGPGSRPRFE GPGSRAQCPS PGGLEAEDSG RPGDSAIGAE AEAAVVTSVS PEEPEAAPRP 
VPLRS