| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_5425 |
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| Symbol | |
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| ID | 8329627 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Actinosynnema mirum DSM 43827 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013093 |
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| Strand | - |
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| Start bp | 6443568 |
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| End bp | 6444308 |
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| Gene Length | 741 bp |
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| Protein Length | 246 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644945862 |
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| Product | pseudouridine synthase |
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| Protein accession | YP_003103090 |
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| Protein GI | 256379430 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.974125 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCTGACC CCGGTTCTGA AGGCGTTCGG CTCCAGAAGG TGCTGGCCAA AGCGGGGATC
GCCTCCCGGC GGGTCGCCGA GGAGCTCATC GAGCTCGGCC GCGTCCAGGT GGACGGCGAG
GTGGTGCGCG AGCAGGGCCG CCGCATCGAC CCCGACAAGG CGGTCGTGCA CGTGGACGGC
GTGCGCGTGG TGCTCCAGGA GGACGTCGTC ACGCTCGTGC TGAACAAGCC GCGCGGGATG
CTGTCCACGA TGCACGACGA CGCGCACCGG CCGTGCGTGG GCGACCTGCT GGTGAATCGC
AAGGAGCGGC TGTTCCACGT CGGCAGGCTG GACGCCGACA CCGAGGGCCT GCTGCTGGTG
ACCAACGACG GCGACCTCGC GCACCGGCTC ATGCACCCCT CCTACGAGGT GCCCAAGACC
TACCTGGCCG AGGTGCCCGG CCCCATCCCG CGCGACCTGG GCAAGCGGCT GCGCTCCGGC
ATCGAGCTGG AGGACGGGCC GGTCAAGGTG GACTCGTTCA AGCTGATCTC CTCGCTGCCC
GGCCGGGCGC TGGTGGAGGT CGTGCTGCAC GAGGGGCGCA AGCACATCGT GCGGCGGCTC
CTGGAGGCCG TGGGGCACCC GGTGCAGACG CTGGTGCGGA CCGCGGTGGG CGAGGTGCGG
CTGGGCAACC AGCGGCCCGG CTCGCTGCGC GTGCTGAACC GGCAGGAGGT CGGGTCGCTG
TACAAGGCCG TGGGCATGTA G
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| Protein sequence | MSDPGSEGVR LQKVLAKAGI ASRRVAEELI ELGRVQVDGE VVREQGRRID PDKAVVHVDG
VRVVLQEDVV TLVLNKPRGM LSTMHDDAHR PCVGDLLVNR KERLFHVGRL DADTEGLLLV
TNDGDLAHRL MHPSYEVPKT YLAEVPGPIP RDLGKRLRSG IELEDGPVKV DSFKLISSLP
GRALVEVVLH EGRKHIVRRL LEAVGHPVQT LVRTAVGEVR LGNQRPGSLR VLNRQEVGSL
YKAVGM
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